Effective results for Acinetobacter lwoffii SH145 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 38 proteins (15 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575588.HMPREF0017_00984(PF13089) (PF13090) (PF02503)
575588.HMPREF0017_00064(PF05704)ER
575588.HMPREF0017_02017(PF13089) (PF13090) (PF02503)
575588.HMPREF0017_01520(PF00199)ER
575588.HMPREF0017_02278(PF13089) (PF13090) (PF02503)
575588.HMPREF0017_02984(PF03959)(ER)
575588.HMPREF0017_03003(PF01679)ER
575588.HMPREF0017_02947(PF01679)ER
575588.HMPREF0017_01078(PF01679)ER; not used
575588.HMPREF0017_02028(PF00199)(mitochondrial)
575588.HMPREF0017_02963PF01051
575588.HMPREF0017_01125(PF14328)
575588.HMPREF0017_02907PF01051
575588.HMPREF0017_03045(PF00199)not used
575588.HMPREF0017_02284(PF00199)
575588.HMPREF0017_02932PF01051
575588.HMPREF0017_03060PF01051
575588.HMPREF0017_03117(PF03400)
575588.HMPREF0017_03116(PF03400)
575588.HMPREF0017_03113(PF03400)
575588.HMPREF0017_03118(PF03400)
575588.HMPREF0017_03043PF01051
575588.HMPREF0017_00932PF08357
575588.HMPREF0017_03054PF01051
575588.HMPREF0017_02695(PF00199)
575588.HMPREF0017_03059PF01051
575588.HMPREF0017_02862(PF00199)
575588.HMPREF0017_03020PF01051
575588.HMPREF0017_03027PF01051
575588.HMPREF0017_02998PF08357
575588.HMPREF0017_00917(PF00199)
575588.HMPREF0017_03038(PF00199)
575588.HMPREF0017_01432(PF11815)
575588.HMPREF0017_03006PF01051
575588.HMPREF0017_00209(PF00199)
575588.HMPREF0017_02839PF01051
575588.HMPREF0017_03014PF01051
575588.HMPREF0017_02950PF01051

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================