Metamenu

Effective results for Acinetobacter junii SH205 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 13 proteins (0 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575587.HMPREF0026_03068(PF00413)ER
575587.HMPREF0026_03067(PF00413)ER
575587.HMPREF0026_00056(PF05704)ER
575587.HMPREF0026_01570(PF10013)not used
575587.HMPREF0026_00748(PF06127)
575587.HMPREF0026_01376(PF11815)
575587.HMPREF0026_00657(PF10462)
575587.HMPREF0026_03070(PF00413)
575587.HMPREF0026_00279(PF01902)
575587.HMPREF0026_02927(PF06127)
575587.HMPREF0026_00428(PF06127)
575587.HMPREF0026_01485(PF01902)
575587.HMPREF0026_00710(PF06127)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================