Metamenu

Effective results for Acinetobacter baumannii ATCC 19606 = CIP 70.34 (eggnog40)

Summary

Number of putative secreted proteins: 11
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 11 proteins (0 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575584.HMPREF0010_03422(PF14497)mitochondrial
575584.HMPREF0010_00888(PF14497)(mitochondrial)
575584.HMPREF0010_02987(PF09588)
575584.HMPREF0010_03593(PF09588)
575584.HMPREF0010_01619(PF12949)
575584.HMPREF0010_02420(PF13455)
575584.HMPREF0010_01835(PF14497)
575584.HMPREF0010_00087(PF11815)
575584.HMPREF0010_03201(PF14497)
575584.HMPREF0010_00253(PF14497)
575584.HMPREF0010_03002(PF09588)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
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