Metamenu

Effective results for Acinetobacter sp. RUH2624 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 13 proteins (1 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575564.HMPREF0014_02483(PF13582)ER
575564.HMPREF0014_02994(PF14497)mitochondrial
575564.HMPREF0014_00182(PF10013)(mitochondrial); not used
575564.HMPREF0014_01884(PF14497)(mitochondrial)
575564.HMPREF0014_02902(PF02485)
575564.HMPREF0014_02901(PF02485)
575564.HMPREF0014_00504(PF02171)
575564.HMPREF0014_02577PF15711
575564.HMPREF0014_02166(PF11815)
575564.HMPREF0014_02542(PF14497)
575564.HMPREF0014_00411(PF14497)
575564.HMPREF0014_02525(PF02460)
575564.HMPREF0014_01977(PF14497)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================