Effective results for Anaplasma centrale str. Israel (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 53
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 4 proteins (0 high, 4 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
574556.ACIS_00679			+		ER
574556.ACIS_00094			+		ER
574556.ACIS_00254			+		ER
574556.ACIS_00938			+		mitochondrial; (mitochondrial)
574556.ACIS_00495			+		ER
574556.ACIS_00250			+		ER
574556.ACIS_00471			+		mitochondrial; (mitochondrial)
574556.ACIS_01157			+		ER
574556.ACIS_00059			+		(mitochondrial)
574556.ACIS_00540			+		(mitochondrial)
574556.ACIS_00484				(PF01018)	mitochondrial
574556.ACIS_00915			+
574556.ACIS_00764			+
574556.ACIS_00420			+
574556.ACIS_00022			+
574556.ACIS_00814			+
574556.ACIS_00788			+
574556.ACIS_00779			+
574556.ACIS_00095				(PF00707)
574556.ACIS_00858			+
574556.ACIS_00150			+
574556.ACIS_00732			+
574556.ACIS_00746			+
574556.ACIS_00365			+
574556.ACIS_00946			+
574556.ACIS_00945			+
574556.ACIS_00943			+
574556.ACIS_00700			+
574556.ACIS_00127				(PF00707)
574556.ACIS_00010			+
574556.ACIS_00237			+
574556.ACIS_00236			+
574556.ACIS_00105			+
574556.ACIS_01128			+
574556.ACIS_00951			+
574556.ACIS_01029			+
574556.ACIS_01150			+
574556.ACIS_01093			+
574556.ACIS_01097			+
574556.ACIS_01095			+
574556.ACIS_00714				(PF01018)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================