Metamenu

Effective results for Acetohalobium arabaticum DSM 5501 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 93 proteins (2 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
574087.Acear_1471(PF07670)ER
574087.Acear_1470(PF07670)ER
574087.Acear_0808(PF07282)(mitochondrial)
574087.Acear_0655(PF07282)(mitochondrial)
574087.Acear_1491(PF07282)(mitochondrial)
574087.Acear_1909(PF07282)(mitochondrial)
574087.Acear_0351(PF07282)(mitochondrial)
574087.Acear_1223(PF07282)(mitochondrial)
574087.Acear_1942(PF07282)(mitochondrial)
574087.Acear_1402(PF07670)(ER); (mitochondrial)
574087.Acear_1997(PF07282)(mitochondrial)
574087.Acear_0489(PF07282)(mitochondrial)
574087.Acear_1939(PF02971) (PF07837)
574087.Acear_1357(PF07282)(mitochondrial)
574087.Acear_1779(PF02421) (PF07670)
574087.Acear_1958(PF02421) (PF07670)
574087.Acear_2341(PF07282)(mitochondrial)
574087.Acear_0066(PF02421) (PF07670)
574087.Acear_0480(PF05034) (PF07476)
574087.Acear_0266(PF01969)
574087.Acear_0269(PF01257)
574087.Acear_0268(PF01257)
574087.Acear_0909(PF07282)
574087.Acear_0872(PF07282)
574087.Acear_1051(PF02607)
574087.Acear_1053(PF02607)
574087.Acear_1056(PF00809)
574087.Acear_1299(PF00809)
574087.Acear_0270(PF01257)
574087.Acear_0271(PF02256)
574087.Acear_1271(PF00809)
574087.Acear_1272(PF02607)
574087.Acear_2268(PF02504)
574087.Acear_0012(PF02421)
574087.Acear_0013(PF07670)
574087.Acear_0954(PF00809)
574087.Acear_0397(PF01409)
574087.Acear_1072(PF00809)
574087.Acear_1493(PF07670)
574087.Acear_2045(PF01964)
574087.Acear_1718(PF02607)
574087.Acear_0532(PF01257)
574087.Acear_1064(PF02504)
574087.Acear_1480(PF09861)
574087.Acear_1243(PF12638)
574087.Acear_1246(PF07282)
574087.Acear_1658PF10469
574087.Acear_0758(PF01964)
574087.Acear_0757(PF01964)
574087.Acear_1903(PF06968)
574087.Acear_1012(PF02504)
574087.Acear_1233(PF06968)
574087.Acear_0354(PF02607)
574087.Acear_2037(PF06968)
574087.Acear_1220(PF00809)
574087.Acear_1221(PF02607)
574087.Acear_1968(PF07282)
574087.Acear_0982(PF01257)
574087.Acear_1109(PF04961)
574087.Acear_2007(PF07282)
574087.Acear_0765(PF07282)
574087.Acear_1022(PF07282)
574087.Acear_1200(PF09861)
574087.Acear_0378(PF07282)
574087.Acear_2301(PF01257)
574087.Acear_2303(PF01257)
574087.Acear_1379(PF07282)
574087.Acear_0356(PF01409)
574087.Acear_1783(PF00809)
574087.Acear_1786(PF01969)
574087.Acear_1940(PF04961)
574087.Acear_0414(PF03652)
574087.Acear_1778(PF07670)
574087.Acear_1777(PF07670)
574087.Acear_1572(PF06968)
574087.Acear_1799(PF09861)
574087.Acear_0953(PF02607)
574087.Acear_0227(PF02256)
574087.Acear_0439(PF02607)
574087.Acear_2175(PF03652)
574087.Acear_0308(PF16760)
574087.Acear_1884(PF01257)
574087.Acear_1885(PF01257)
574087.Acear_1883(PF02256)
574087.Acear_0445(PF00809)
574087.Acear_0444(PF02607)
574087.Acear_0930(PF00809)
574087.Acear_0981(PF01257)
574087.Acear_0929(PF02607)
574087.Acear_0858(PF07282)
574087.Acear_0215(PF07282)
574087.Acear_0668PF10469
574087.Acear_0482(PF14330)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================