Metamenu

Effective results for Asticcacaulis excentricus CB 48 (eggnog40)

Summary

Number of putative secreted proteins: 129
- Predicted by T4SEpre: 82
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 64 proteins (1 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
573065.Astex_1803+(PF13202) (PF00036)ER
573065.Astex_2158(PF13364) (PF10435) (PF13363)(mitochondrial); ER
573065.Astex_1199+(PF01963)ER
573065.Astex_1640+(PF14310)ER
573065.Astex_2815(PF06455)ER
573065.Astex_1600(PF14310)mitochondrial
573065.Astex_0774+ER
573065.Astex_2724(PF14310)ER; (ER)
573065.Astex_3230(PF13202)ER
573065.Astex_2997+(mitochondrial); mitochondrial
573065.Astex_3224(PF14310)ER
573065.Astex_3225(PF16355)mitochondrial
573065.Astex_1363+ER
573065.Astex_1219(PF14310)mitochondrial
573065.Astex_3438+(mitochondrial)
573065.Astex_1373(PF14310)ER
573065.Astex_0132+(mitochondrial); plastid
573065.Astex_2467(PF14310)mitochondrial
573065.Astex_0901+ER
573065.Astex_1529+ER
573065.Astex_3054+ER
573065.Astex_2896+ER
573065.Astex_1226+(PF16355)(mitochondrial)
573065.Astex_2602(PF16355)ER
573065.Astex_3317+ER
573065.Astex_3315(PF14310)ER
573065.Astex_3319(PF16499)ER
573065.Astex_3079+ER
573065.Astex_3326(PF04820)ER
573065.Astex_0869(PF13202)ER
573065.Astex_1804(PF13202)ER
573065.Astex_1807(PF13202)ER
573065.Astex_3404(PF14310)ER
573065.Astex_2331(PF01963)ER
573065.Astex_1018(PF16499)ER
573065.Astex_0871+ER
573065.Astex_3509(PF16499)ER
573065.Astex_1648(PF13202)ER
573065.Astex_0383+ER
573065.Astex_0519(PF01963)mitochondrial; ER
573065.Astex_1915(PF13364)ER
573065.Astex_2170(PF09224)mitochondrial
573065.Astex_1670+(mitochondrial); plastid
573065.Astex_1430+ER
573065.Astex_3184+ER
573065.Astex_1929(PF16355)ER
573065.Astex_2586(PF04820)ER
573065.Astex_2589(PF16499)ER
573065.Astex_2905+mitochondrial; (mitochondrial)
573065.Astex_0896+(ER)
573065.Astex_1119(PF01963)ER
573065.Astex_1943(PF14686) PF06045 (PF14683)
573065.Astex_3384+(PF04820)
573065.Astex_0756+(plastid)
573065.Astex_3228(PF08881)(ER)
573065.Astex_3229+(PF13202)
573065.Astex_3213(PF04820)(mitochondrial)
573065.Astex_3473+(ER)
573065.Astex_2452+(plastid)
573065.Astex_3312+(ER)
573065.Astex_3402(PF14310)(ER)
573065.Astex_0454+(mitochondrial)
573065.Astex_0148+(plastid)
573065.Astex_2969+
573065.Astex_0703(PF13621)
573065.Astex_0704(PF04820)
573065.Astex_3381(PF13621)
573065.Astex_3383(PF04820)
573065.Astex_3386(PF13621)
573065.Astex_2039(PF11899)
573065.Astex_3382(PF04820)
573065.Astex_2958+
573065.Astex_2042(PF11899)
573065.Astex_1633+
573065.Astex_1894(PF04820)
573065.Astex_1893(PF04820)
573065.Astex_0545+
573065.Astex_3495+
573065.Astex_0439+
573065.Astex_2721(PF04820)
573065.Astex_2469+
573065.Astex_1629+
573065.Astex_1571+
573065.Astex_1970+
573065.Astex_0025+
573065.Astex_2269+
573065.Astex_0968+
573065.Astex_1988(PF04820)
573065.Astex_0633+
573065.Astex_0355+
573065.Astex_3207(PF16355)
573065.Astex_0907+
573065.Astex_1230(PF13621)
573065.Astex_3052+
573065.Astex_3250+
573065.Astex_3307(PF04820)
573065.Astex_3306(PF04820)
573065.Astex_3309(PF04820)
573065.Astex_0258+
573065.Astex_0074(PF05168)
573065.Astex_2419+
573065.Astex_0476+
573065.Astex_2306+
573065.Astex_0311+
573065.Astex_0262+
573065.Astex_3064(PF13661)
573065.Astex_3083+
573065.Astex_2112+
573065.Astex_1475(PF05168)
573065.Astex_3308(PF04820)
573065.Astex_1484+
573065.Astex_1487(PF13207)
573065.Astex_3434+
573065.Astex_0739(PF05168)
573065.Astex_3359+
573065.Astex_2453+
573065.Astex_1299(PF10013)not used
573065.Astex_0187+
573065.Astex_0680+
573065.Astex_1533+
573065.Astex_1595+
573065.Astex_1846+
573065.Astex_0535(PF05168)
573065.Astex_0158+
573065.Astex_2155+
573065.Astex_2023+
573065.Astex_1615+
573065.Astex_1616+
573065.Astex_0228+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.6 (26/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================