Metamenu

Effective results for Arcobacter nitrofigilis DSM 7299 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 16 proteins (0 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
572480.Arnit_0035(PF01058)(ER)
572480.Arnit_1358(PF01058)(mitochondrial)
572480.Arnit_1631(PF10184)
572480.Arnit_1365(PF01058)
572480.Arnit_1360(PF01058)
572480.Arnit_1536(PF11074)
572480.Arnit_2461(PF02943)
572480.Arnit_0614(PF05225)
572480.Arnit_0737(PF01058)
572480.Arnit_0258(PF03848)
572480.Arnit_1079(PF01142)
572480.Arnit_2653(PF01058)
572480.Arnit_0394(PF01142)
572480.Arnit_2918(PF12513)
572480.Arnit_2186(PF03848)
572480.Arnit_2978(PF01058)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================