Effective results for Halanaerobium praevalens DSM 2228 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 36 proteins (1 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
572479.Hprae_1207(PF03553)ER; (ER)
572479.Hprae_0094(PF03553)ER
572479.Hprae_2006(PF00163)(mitochondrial)
572479.Hprae_1598(PF02906)mitochondrial
572479.Hprae_1661(PF00163)(mitochondrial)
572479.Hprae_1554(PF03553)(ER)
572479.Hprae_1240(PF14697)ER
572479.Hprae_0063(PF03553)(ER)
572479.Hprae_0804PF10516ER
572479.Hprae_2062(PF03644)(ER)
572479.Hprae_0769(PF03553)ER
572479.Hprae_0209(PF03553)ER
572479.Hprae_0089(PF02971) (PF07837)
572479.Hprae_1905(PF03553)(ER)
572479.Hprae_1850(PF05034) (PF07476)
572479.Hprae_2082(PF02844) (PF02843)
572479.Hprae_0150(PF02844) (PF02843)
572479.Hprae_1848(PF14330)
572479.Hprae_1595(PF02906)
572479.Hprae_0436(PF14697)
572479.Hprae_1121(PF09370)
572479.Hprae_1119(PF09370)
572479.Hprae_0076(PF14697)
572479.Hprae_0457(PF02504)
572479.Hprae_0701(PF07892)
572479.Hprae_1627(PF02906)
572479.Hprae_0013(PF07892)
572479.Hprae_0492(PF00862)
572479.Hprae_1634(PF02906)
572479.Hprae_0143(PF02504)
572479.Hprae_1628(PF14697)
572479.Hprae_0582(PF14697)not used
572479.Hprae_0822(PF14792)
572479.Hprae_0776(PF02504)
572479.Hprae_1559(PF03553)
572479.Hprae_1780(PF02906)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================