Effective results for Halanaerobium praevalens DSM 2228 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 36 proteins (1 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
572479.Hprae_1207				(PF03553)	ER; (ER)
572479.Hprae_0094				(PF03553)	ER
572479.Hprae_2006				(PF00163)	(mitochondrial)
572479.Hprae_1598				(PF02906)	mitochondrial
572479.Hprae_1661				(PF00163)	(mitochondrial)
572479.Hprae_1554				(PF03553)	(ER)
572479.Hprae_1240				(PF14697)	ER
572479.Hprae_0063				(PF03553)	(ER)
572479.Hprae_0804				PF10516	ER
572479.Hprae_2062				(PF03644)	(ER)
572479.Hprae_0769				(PF03553)	ER
572479.Hprae_0209				(PF03553)	ER
572479.Hprae_0089				(PF02971) (PF07837)
572479.Hprae_1905				(PF03553)	(ER)
572479.Hprae_1850				(PF05034) (PF07476)
572479.Hprae_2082				(PF02844) (PF02843)
572479.Hprae_0150				(PF02844) (PF02843)
572479.Hprae_1848				(PF14330)
572479.Hprae_1595				(PF02906)
572479.Hprae_0436				(PF14697)
572479.Hprae_1121				(PF09370)
572479.Hprae_1119				(PF09370)
572479.Hprae_0076				(PF14697)
572479.Hprae_0457				(PF02504)
572479.Hprae_0701				(PF07892)
572479.Hprae_1627				(PF02906)
572479.Hprae_0013				(PF07892)
572479.Hprae_0492				(PF00862)
572479.Hprae_1634				(PF02906)
572479.Hprae_0143				(PF02504)
572479.Hprae_1628				(PF14697)
572479.Hprae_0582				(PF14697)	not used
572479.Hprae_0822				(PF14792)
572479.Hprae_0776				(PF02504)
572479.Hprae_1559				(PF03553)
572479.Hprae_1780				(PF02906)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================