Effective results for Wolbachia endosymbiont of Culex quinquefasciatus Pel (eggnog40)
Summary
Number of putative secreted proteins: 143
- Predicted by T4SEpre: 109
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 68 proteins (56 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 570417.WPa_0292 | PF12796 PF00023 PF13857 | (mitochondrial) | |||
| 570417.WPa_0410 | + | PF12796 PF13857 (PF13637) | |||
| 570417.WPa_0340 | PF12796 PF00023 | (mitochondrial) | |||
| 570417.WPa_0730 | PF12796 PF00023 | (mitochondrial) | |||
| 570417.WPa_0299 | PF12796 PF00023 | (mitochondrial) | |||
| 570417.WPa_0113 | + | (mitochondrial) | |||
| 570417.WPa_0413 | PF12796 PF00023 | (mitochondrial) | |||
| 570417.WPa_0163 | + | mitochondrial | |||
| 570417.WPa_0112 | PF13606 | (mitochondrial) | |||
| 570417.WPa_0599 | + | ER | |||
| 570417.WPa_1339 | + | ER | |||
| 570417.WPa_0620 | + | ER | |||
| 570417.WPa_0621 | + | ER | |||
| 570417.WPa_1053 | + | ER | |||
| 570417.WPa_0944 | + | ER | |||
| 570417.WPa_0531 | + | (mitochondrial) | |||
| 570417.WPa_1280 | + | ER | |||
| 570417.WPa_1213 | + | ER | |||
| 570417.WPa_0954 | + | mitochondrial | |||
| 570417.WPa_0766 | + | (ER) | |||
| 570417.WPa_0197 | + | ER | |||
| 570417.WPa_1361 | + | mitochondrial | |||
| 570417.WPa_0311 | (PF01343) | (mitochondrial) | |||
| 570417.WPa_0100 | + | ER | |||
| 570417.WPa_1378 | PF12796 PF00023 (PF13637) | ||||
| 570417.WPa_0218 | PF12796 | (ER) | |||
| 570417.WPa_0217 | PF12796 | (mitochondrial) | |||
| 570417.WPa_1070 | + | (mitochondrial) | |||
| 570417.WPa_0677 | PF12796 | ER | |||
| 570417.WPa_0787 | PF12796 | ER | |||
| 570417.WPa_0252 | (PF01343) | (mitochondrial) | |||
| 570417.WPa_0512 | + | ER | |||
| 570417.WPa_0326 | (PF01343) | (mitochondrial) | |||
| 570417.WPa_0637 | + | ER | |||
| 570417.WPa_0293 | + | PF12796 | |||
| 570417.WPa_1006 | + | (mitochondrial) | |||
| 570417.WPa_0414 | PF12796 PF00023 | ||||
| 570417.WPa_1014 | + | PF12796 | |||
| 570417.WPa_1334 | + | (mitochondrial) | |||
| 570417.WPa_1337 | PF12796 | (ER) | |||
| 570417.WPa_0339 | PF12796 PF00023 | ||||
| 570417.WPa_0688 | PF12796 PF00023 | ||||
| 570417.WPa_1379 | PF12796 (PF13637) | ||||
| 570417.WPa_0300 | PF12796 PF00023 | ||||
| 570417.WPa_0652 | PF13857 (PF13637) | ||||
| 570417.WPa_0658 | + | (mitochondrial) | |||
| 570417.WPa_1265 | (PF13481) | plastid | |||
| 570417.WPa_0763 | PF12796 PF13606 | ||||
| 570417.WPa_0768 | + | PF12796 | |||
| 570417.WPa_0680 | + | PF12796 | |||
| 570417.WPa_0812 | + | (mitochondrial) | |||
| 570417.WPa_0433 | + | (PF13481) | |||
| 570417.WPa_0383 | PF12796 PF13857 | ||||
| 570417.WPa_0068 | + | (mitochondrial) | |||
| 570417.WPa_1147 | + | PF00023 | |||
| 570417.WPa_0648 | PF12796 (PF13637) | ||||
| 570417.WPa_0729 | PF13857 | (mitochondrial) | |||
| 570417.WPa_0731 | + | PF12796 | |||
| 570417.WPa_0103 | + | (mitochondrial) | |||
| 570417.WPa_1279 | PF12796 PF00023 | ||||
| 570417.WPa_0924 | + | (mitochondrial) | |||
| 570417.WPa_0070 | + | (plastid) | |||
| 570417.WPa_0781 | + | (plastid) | |||
| 570417.WPa_0426 | + | (PF01343) | |||
| 570417.WPa_1303 | + | (PF01343) | |||
| 570417.WPa_0452 | PF12796 | (ER) | |||
| 570417.WPa_0733 | PF12796 PF13857 | ||||
| 570417.WPa_0638 | PF12796 (PF13637) | ||||
| 570417.WPa_0890 | + | ||||
| 570417.WPa_1349 | + | ||||
| 570417.WPa_1345 | + | ||||
| 570417.WPa_0296 | PF12796 | ||||
| 570417.WPa_0205 | + | ||||
| 570417.WPa_0350 | + | ||||
| 570417.WPa_0528 | + | ||||
| 570417.WPa_0521 | + | ||||
| 570417.WPa_0932 | + | ||||
| 570417.WPa_0665 | + | ||||
| 570417.WPa_0987 | + | ||||
| 570417.WPa_0986 | + | ||||
| 570417.WPa_0017 | + | ||||
| 570417.WPa_0790 | + | ||||
| 570417.WPa_0793 | + | ||||
| 570417.WPa_1384 | + | ||||
| 570417.WPa_0449 | + | ||||
| 570417.WPa_0195 | PF12796 | ||||
| 570417.WPa_0283 | PF02902 | ||||
| 570417.WPa_0831 | + | ||||
| 570417.WPa_0407 | PF13857 | ||||
| 570417.WPa_0273 | + | ||||
| 570417.WPa_0173 | + | ||||
| 570417.WPa_1252 | + | ||||
| 570417.WPa_0098 | + | ||||
| 570417.WPa_0875 | + | ||||
| 570417.WPa_1326 | + | ||||
| 570417.WPa_1322 | + | ||||
| 570417.WPa_0507 | + | ||||
| 570417.WPa_1192 | + | ||||
| 570417.WPa_0342 | + | ||||
| 570417.WPa_0346 | PF12796 | ||||
| 570417.WPa_1105 | PF12796 | ||||
| 570417.WPa_0953 | + | ||||
| 570417.WPa_0689 | PF12796 | ||||
| 570417.WPa_0767 | PF13606 | ||||
| 570417.WPa_0685 | + | ||||
| 570417.WPa_0481 | + | ||||
| 570417.WPa_1368 | + | ||||
| 570417.WPa_0436 | (PF13481) | ||||
| 570417.WPa_1316 | (PF13481) | ||||
| 570417.WPa_1312 | (PF13481) | ||||
| 570417.WPa_0388 | PF12796 | ||||
| 570417.WPa_0266 | (PF13481) | ||||
| 570417.WPa_0351 | + | ||||
| 570417.WPa_0506 | PF12796 | ||||
| 570417.WPa_1220 | PF12796 | ||||
| 570417.WPa_1226 | + | ||||
| 570417.WPa_0315 | PF12796 | ||||
| 570417.WPa_1032 | + | ||||
| 570417.WPa_1130 | + | ||||
| 570417.WPa_1318 | (PF13481) | ||||
| 570417.WPa_0035 | + | ||||
| 570417.WPa_0868 | + | ||||
| 570417.WPa_0862 | PF13857 | ||||
| 570417.WPa_1293 | PF12796 | ||||
| 570417.WPa_1291 | PF02902 | ||||
| 570417.WPa_0105 | + | ||||
| 570417.WPa_0462 | PF12796 | ||||
| 570417.WPa_0606 | PF12796 | ||||
| 570417.WPa_1275 | PF12796 | ||||
| 570417.WPa_0776 | PF12796 | ||||
| 570417.WPa_0774 | PF12796 | ||||
| 570417.WPa_0444 | + | ||||
| 570417.WPa_1047 | + | ||||
| 570417.WPa_1305 | + | ||||
| 570417.WPa_0390 | PF12796 | ||||
| 570417.WPa_0392 | + | ||||
| 570417.WPa_0257 | + | ||||
| 570417.WPa_0256 | PF12796 | ||||
| 570417.WPa_1308 | PF12796 | ||||
| 570417.WPa_1309 | + | ||||
| 570417.WPa_0152 | + | ||||
| 570417.WPa_0316 | + | ||||
| 570417.WPa_1129 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.3 (13/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.3 (13/10 KEGG proteins)
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