Effective results for Enterococcus gallinarum EG2 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 69 proteins (2 high, 67 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
565653.EGBG_00309				(PF00359)	(mitochondrial)
565653.EGBG_00303				(PF05738)	ER
565653.EGBG_01797				(PF00137)	ER; (ER)
565653.EGBG_01106				(PF01813)	(mitochondrial)
565653.EGBG_01103				(PF01990)	mitochondrial
565653.EGBG_01927				(PF05738)	ER
565653.EGBG_01926				(PF05738)	ER
565653.EGBG_01925				(PF05738)	ER
565653.EGBG_00662				(PF05738)	mitochondrial
565653.EGBG_01063				(PF01992)	(mitochondrial)
565653.EGBG_00308				(PF00359)	(mitochondrial)
565653.EGBG_02789				(PF16875) (PF16874)
565653.EGBG_02051				(PF00359)	(ER)
565653.EGBG_01104				(PF02874) (PF16886)
565653.EGBG_00258				(PF02971) (PF07837)
565653.EGBG_00414				(PF16875) (PF16874)
565653.EGBG_00475				(PF16875) (PF16874)
565653.EGBG_01061				(PF02874) (PF16886)
565653.EGBG_02880				(PF02874)
565653.EGBG_02793				(PF00232)
565653.EGBG_00835				(PF00359)
565653.EGBG_01059				(PF01813)
565653.EGBG_02046				(PF00232)
565653.EGBG_00145				(PF00232)
565653.EGBG_02052				(PF00359)
565653.EGBG_01800				(PF02874)
565653.EGBG_01802				(PF02874)
565653.EGBG_02848				(PF00232)
565653.EGBG_02585				(PF00232)
565653.EGBG_00696				(PF00232)
565653.EGBG_00697				(PF00232)
565653.EGBG_00162				(PF06824)
565653.EGBG_00235				(PF14249)
565653.EGBG_00431				(PF06824)
565653.EGBG_02580				(PF00232)
565653.EGBG_02927				(PF00232)
565653.EGBG_02922				(PF00232)
565653.EGBG_02660				(PF00359)
565653.EGBG_02664				(PF00232)
565653.EGBG_01105				(PF02874)
565653.EGBG_01101				(PF01991)
565653.EGBG_01100				(PF00137)
565653.EGBG_01102				(PF01992)
565653.EGBG_01727				(PF05738)
565653.EGBG_01921				(PF00232)
565653.EGBG_02706				(PF00359)
565653.EGBG_02707				(PF00359)
565653.EGBG_02709				(PF00359)
565653.EGBG_01609				(PF00359)
565653.EGBG_00063				(PF08950)
565653.EGBG_00092				(PF00359)
565653.EGBG_00079				(PF00359)
565653.EGBG_01622				PF00910
565653.EGBG_01407				(PF00232)
565653.EGBG_01099				(PF01496)
565653.EGBG_01655				(PF00359)
565653.EGBG_03012				(PF00232)
565653.EGBG_01649				(PF00359)
565653.EGBG_01266				(PF00232)
565653.EGBG_00331				(PF00232)
565653.EGBG_00339				(PF00359)
565653.EGBG_02777				(PF00359)
565653.EGBG_02778				(PF00232)
565653.EGBG_01062				(PF01990)
565653.EGBG_01060				(PF02874)
565653.EGBG_01066				(PF01496)
565653.EGBG_01064				(PF01991)
565653.EGBG_01065				(PF00137)
565653.EGBG_00550				PF15886

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================