Effective results for Streptococcus sp. M143 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 19 proteins (2 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
563037.HMPREF0850_00944			+		mitochondrial
563037.HMPREF0850_01204			+		ER
563037.HMPREF0850_00205				(PF04991)	(ER)
563037.HMPREF0850_01086				(PF09683)	ER
563037.HMPREF0850_01185				(PF00344)	mitochondrial
563037.HMPREF0850_01184			+		ER
563037.HMPREF0850_01054			+		ER
563037.HMPREF0850_01334				(PF03644)	(mitochondrial); mitochondrial
563037.HMPREF0850_00110			+		ER
563037.HMPREF0850_01454			+		ER
563037.HMPREF0850_01656			+		(ER)
563037.HMPREF0850_00701			+		ER
563037.HMPREF0850_01728				(PF03083)	ER
563037.HMPREF0850_00383			+		ER
563037.HMPREF0850_00384			+		ER
563037.HMPREF0850_00385			+		ER
563037.HMPREF0850_00354			+		ER
563037.HMPREF0850_01746				(PF00344)	mitochondrial
563037.HMPREF0850_01105			+		ER
563037.HMPREF0850_01109			+		ER
563037.HMPREF0850_00992			+		mitochondrial; (mitochondrial)
563037.HMPREF0850_00745			+		ER
563037.HMPREF0850_00189			+		(ER)
563037.HMPREF0850_00981			+		ER
563037.HMPREF0850_00969			+		mitochondrial
563037.HMPREF0850_00771			+		(mitochondrial); (plastid)
563037.HMPREF0850_01777			+		ER
563037.HMPREF0850_00795			+		ER
563037.HMPREF0850_00557			+		ER
563037.HMPREF0850_01475				PF02916	(ER)
563037.HMPREF0850_01267			+		(mitochondrial)
563037.HMPREF0850_00541				(PF05495)
563037.HMPREF0850_01146			+
563037.HMPREF0850_00307			+
563037.HMPREF0850_01371			+
563037.HMPREF0850_01518				PF04103
563037.HMPREF0850_00207				(PF04991)
563037.HMPREF0850_00208				(PF04991)
563037.HMPREF0850_01412			+
563037.HMPREF0850_01636			+
563037.HMPREF0850_01633			+
563037.HMPREF0850_00040			+
563037.HMPREF0850_00268			+
563037.HMPREF0850_01436			+
563037.HMPREF0850_00678			+
563037.HMPREF0850_00472			+
563037.HMPREF0850_00905			+
563037.HMPREF0850_01424			+
563037.HMPREF0850_00116			+
563037.HMPREF0850_00646			+
563037.HMPREF0850_01190			+
563037.HMPREF0850_01044			+
563037.HMPREF0850_01455				(PF07555)
563037.HMPREF0850_01296			+
563037.HMPREF0850_01291			+		not used
563037.HMPREF0850_00077			+
563037.HMPREF0850_00072			+
563037.HMPREF0850_01451			+
563037.HMPREF0850_01077			+
563037.HMPREF0850_00006			+
563037.HMPREF0850_01668			+
563037.HMPREF0850_01665			+
563037.HMPREF0850_00714			+
563037.HMPREF0850_00702			+
563037.HMPREF0850_00838			+
563037.HMPREF0850_01019			+
563037.HMPREF0850_01012			+
563037.HMPREF0850_01151			+
563037.HMPREF0850_00600			+
563037.HMPREF0850_00609			+
563037.HMPREF0850_01134				(PF03083)
563037.HMPREF0850_01254			+
563037.HMPREF0850_00034				(PF01633)
563037.HMPREF0850_01469				(PF04991)
563037.HMPREF0850_01030			+
563037.HMPREF0850_00299			+
563037.HMPREF0850_00753				(PF07555)
563037.HMPREF0850_00190			+
563037.HMPREF0850_01758			+
563037.HMPREF0850_01801				(PF03596)	not used
563037.HMPREF0850_00994			+
563037.HMPREF0850_00377			+
563037.HMPREF0850_00376			+
563037.HMPREF0850_01566			+
563037.HMPREF0850_01765			+
563037.HMPREF0850_00980			+
563037.HMPREF0850_01163			+
563037.HMPREF0850_01226			+
563037.HMPREF0850_00361				(PF01633)
563037.HMPREF0850_00770			+
563037.HMPREF0850_00084				(PF03596)
563037.HMPREF0850_00423			+
563037.HMPREF0850_00835			+
563037.HMPREF0850_00227			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================