Metamenu

Effective results for Pectobacterium carotovorum subsp. carotovorum PC1 (eggnog40)

Summary

Number of putative secreted proteins: 624
- Predicted by EffectiveT3: 217 (high confidence), 297 (low confidence)
- Predicted by EffectiveCCBD: 32 within, 18 before, 44 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 37 proteins (3 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
561230.PC1_0682(PF14686) PF06045 (PF14683)ER
561230.PC1_2342+mitochondrial
561230.PC1_1308(<)ER
561230.PC1_1305(>)ER
561230.PC1_1307+ER
561230.PC1_3947(PF16332)ER
561230.PC1_3946PF06268ER
561230.PC1_0801(>)(mitochondrial)
561230.PC1_0797+ER
561230.PC1_3400+(<)plastid
561230.PC1_1883(>)ER
561230.PC1_2125(PF00295)ER
561230.PC1_0690(>)ER
561230.PC1_3858(PF00544)ER
561230.PC1_1806(>)mitochondrial
561230.PC1_2847(>)ER
561230.PC1_1935(>)mitochondrial
561230.PC1_2593+mitochondrial
561230.PC1_1907(>)ER
561230.PC1_0988(PF03211)ER
561230.PC1_0989(PF00295)ER
561230.PC1_3859(PF00544)ER
561230.PC1_2863(PF00544)mitochondrial
561230.PC1_1433+ER; (plastid)
561230.PC1_1749+ER
561230.PC1_3508+ER
561230.PC1_2943+ER
561230.PC1_3414+(ER); (mitochondrial)
561230.PC1_3616+(mitochondrial)
561230.PC1_2803(<)ER
561230.PC1_0065(PF13332)ER
561230.PC1_0063(<)ER
561230.PC1_2025(<)ER
561230.PC1_2021(<)ER; (ER)
561230.PC1_3860(PF00544)ER
561230.PC1_4174(>)ER
561230.PC1_1417+(ER)
561230.PC1_2255+ER; (ER)
561230.PC1_1134(PF07720)ER
561230.PC1_0284(>)ER
561230.PC1_3208+ER
561230.PC1_1092(PF00295)ER; (ER)
561230.PC1_1276+(ER)
561230.PC1_3835(<)ER
561230.PC1_0118+ER; (ER)
561230.PC1_0590(>)ER
561230.PC1_0024(>)ER
561230.PC1_3422(>)ER
561230.PC1_2178(>)ER
561230.PC1_1218(>)ER
561230.PC1_1322(>)ER
561230.PC1_2994+ER
561230.PC1_1402(>)ER
561230.PC1_3039(>)ER
561230.PC1_3959+ER
561230.PC1_0345+(mitochondrial); (plastid)
561230.PC1_2572++
561230.PC1_2570+(plastid)
561230.PC1_4134(+)ER
561230.PC1_1833(+)(ER)
561230.PC1_0839+(ER)
561230.PC1_2159(+)(ER)
561230.PC1_3769+(plastid)
561230.PC1_2092(+)ER
561230.PC1_1826+(mitochondrial); (plastid)
561230.PC1_3317+(mitochondrial)
561230.PC1_2429(+)ER
561230.PC1_0789+(plastid)
561230.PC1_3434(+)mitochondrial; (mitochondrial)
561230.PC1_1809(>)(plastid)
561230.PC1_2848(+)(ER); (mitochondrial)
561230.PC1_1349+(<)
561230.PC1_4192+(mitochondrial)
561230.PC1_0193++
561230.PC1_0192(+)ER
561230.PC1_0227(+)(mitochondrial)
561230.PC1_2239(PF03142) PF01644
561230.PC1_3322(+)(mitochondrial)
561230.PC1_2330(PF13332)(mitochondrial)
561230.PC1_4099(+)(mitochondrial)
561230.PC1_1178(+)ER; (ER)
561230.PC1_2584+plastid
561230.PC1_3851+(>)
561230.PC1_1371(PF00544)plastid
561230.PC1_0918+(plastid)
561230.PC1_3479+(ER)
561230.PC1_1115+(plastid)
561230.PC1_2493(+)(ER)
561230.PC1_3833(+)(ER); (plastid)
561230.PC1_0087+(>)
561230.PC1_2806+(plastid)
561230.PC1_3216+(mitochondrial)
561230.PC1_3269(+)(mitochondrial)
561230.PC1_1632(+)(ER)
561230.PC1_2264(+)ER
561230.PC1_3073(>)(PF06421)
561230.PC1_1706+(plastid)
561230.PC1_3492(+)(ER)
561230.PC1_2725+(PF03079)
561230.PC1_0710(+)(mitochondrial)
561230.PC1_2820(+)(mitochondrial)
561230.PC1_1551+(mitochondrial)
561230.PC1_2285(+)ER
561230.PC1_1091(>)(ER)
561230.PC1_2117+(ER)
561230.PC1_1471(+)ER
561230.PC1_1479+(mitochondrial)
561230.PC1_4015(>)(ER)
561230.PC1_2176+(PF13332)
561230.PC1_1671+(plastid)
561230.PC1_1854+(mitochondrial)
561230.PC1_3694+(mitochondrial)
561230.PC1_1998(+)+(plastid)
561230.PC1_2388(+)(>)(mitochondrial)
561230.PC1_1199(+)(mitochondrial); (plastid)
561230.PC1_1527+(plastid)
561230.PC1_3371(+)(PF00295)
561230.PC1_4027+
561230.PC1_2797+
561230.PC1_2798(+)(mitochondrial)
561230.PC1_2402+
561230.PC1_2150(+)(ER)
561230.PC1_2153+
561230.PC1_2396+
561230.PC1_1224+
561230.PC1_2679+
561230.PC1_0637+
561230.PC1_1940+
561230.PC1_1302+
561230.PC1_2890+
561230.PC1_0492(<)
561230.PC1_0309+
561230.PC1_4256(<)
561230.PC1_2158+
561230.PC1_3165+
561230.PC1_2568(>)
561230.PC1_2569+
561230.PC1_3301(+)(PF03079)
561230.PC1_3949+
561230.PC1_0916(>)
561230.PC1_1824+
561230.PC1_1041+
561230.PC1_0911+
561230.PC1_1952(>)
561230.PC1_4040(+)+
561230.PC1_0153+
561230.PC1_1316+
561230.PC1_0790+
561230.PC1_1554(+)(mitochondrial)
561230.PC1_0378(>)
561230.PC1_0207+
561230.PC1_2447+
561230.PC1_3776+
561230.PC1_3778+
561230.PC1_3572+
561230.PC1_3172(PF05929)
561230.PC1_3401+
561230.PC1_1438+
561230.PC1_2452+
561230.PC1_1966+
561230.PC1_1145+
561230.PC1_1815+
561230.PC1_1811(+)plastid
561230.PC1_0146(+)(plastid)
561230.PC1_1367+
561230.PC1_2947+
561230.PC1_0565+
561230.PC1_1766+
561230.PC1_1765+
561230.PC1_0368+not used
561230.PC1_0216+
561230.PC1_0644+
561230.PC1_2237(+)(mitochondrial)
561230.PC1_2548+
561230.PC1_3326+
561230.PC1_3321+
561230.PC1_1022(>)
561230.PC1_2059+
561230.PC1_2580+
561230.PC1_3542+
561230.PC1_1153+
561230.PC1_2589+
561230.PC1_1801(PF04399)
561230.PC1_1805+
561230.PC1_1570(>)
561230.PC1_2843+
561230.PC1_2840+
561230.PC1_0688+
561230.PC1_0994+
561230.PC1_0355+
561230.PC1_0226+
561230.PC1_3327+
561230.PC1_3323+
561230.PC1_3151+
561230.PC1_3155+
561230.PC1_3421(>)
561230.PC1_2685(+)(PF06421)
561230.PC1_2590+
561230.PC1_2596+
561230.PC1_1351+
561230.PC1_1164(>)
561230.PC1_4196(+)(plastid)
561230.PC1_2920+
561230.PC1_2857+
561230.PC1_1747(<)not used
561230.PC1_0981(>)
561230.PC1_0982+
561230.PC1_0983(+)+
561230.PC1_4214+
561230.PC1_0236+
561230.PC1_0235(+)(ER)
561230.PC1_3185+
561230.PC1_2321+
561230.PC1_2324+
561230.PC1_3982+
561230.PC1_3985(+)(plastid)
561230.PC1_3989+
561230.PC1_1453+
561230.PC1_2216+
561230.PC1_2210+
561230.PC1_2980+
561230.PC1_1918+
561230.PC1_4184+
561230.PC1_1599+
561230.PC1_2860(+)plastid
561230.PC1_2862(PF00295)
561230.PC1_1753+
561230.PC1_3625+
561230.PC1_3628+
561230.PC1_3199(+)(mitochondrial)
561230.PC1_2467+
561230.PC1_2468(<)
561230.PC1_2645+
561230.PC1_2260+
561230.PC1_2006(>)
561230.PC1_2005+
561230.PC1_2008+
561230.PC1_1109+
561230.PC1_1101+
561230.PC1_1455+
561230.PC1_0741(+)(plastid)
561230.PC1_2875+
561230.PC1_2939+
561230.PC1_2946+
561230.PC1_1430+
561230.PC1_0250(+)(mitochondrial); not used
561230.PC1_3417+
561230.PC1_3612+
561230.PC1_3473+
561230.PC1_3276+
561230.PC1_2278+
561230.PC1_3127+
561230.PC1_0901(<)
561230.PC1_2017+
561230.PC1_0903+
561230.PC1_0660+
561230.PC1_1930+
561230.PC1_2804+
561230.PC1_2348+
561230.PC1_0466+
561230.PC1_1427+
561230.PC1_3593(>)
561230.PC1_0064+
561230.PC1_0426+
561230.PC1_0425+
561230.PC1_3284(>)
561230.PC1_0722+
561230.PC1_3462(+)(ER)
561230.PC1_2642(PF05929)
561230.PC1_3264+
561230.PC1_3267+
561230.PC1_0194(+)(plastid)
561230.PC1_3864+
561230.PC1_3200+
561230.PC1_2731+
561230.PC1_2737+
561230.PC1_2664+
561230.PC1_1568+
561230.PC1_0093+
561230.PC1_0656+
561230.PC1_0385(PF01885)not used
561230.PC1_0381(PF01885)
561230.PC1_0476+
561230.PC1_2699+
561230.PC1_0279+
561230.PC1_0276(+)(ER)
561230.PC1_0079+
561230.PC1_0658(<)
561230.PC1_3495+
561230.PC1_2658+
561230.PC1_2653+
561230.PC1_2258(<)
561230.PC1_2031+
561230.PC1_2353+
561230.PC1_1133+
561230.PC1_0717+
561230.PC1_1280+
561230.PC1_1394(>)
561230.PC1_0448(+)(mitochondrial)
561230.PC1_3017+
561230.PC1_0046+
561230.PC1_1285+
561230.PC1_1354(+)(mitochondrial)
561230.PC1_3665+
561230.PC1_3062+
561230.PC1_2623+
561230.PC1_2620+
561230.PC1_2625+
561230.PC1_3719+
561230.PC1_3399+
561230.PC1_2758+
561230.PC1_0678+
561230.PC1_0677+
561230.PC1_1273+
561230.PC1_2525+
561230.PC1_4112+
561230.PC1_0291+
561230.PC1_4029+
561230.PC1_1501(PF05141)
561230.PC1_0873+
561230.PC1_3450+
561230.PC1_0452+
561230.PC1_3125+
561230.PC1_2638+
561230.PC1_2630(+)(plastid)
561230.PC1_1441+
561230.PC1_2292+
561230.PC1_1711+
561230.PC1_1882(PF16387)
561230.PC1_3904(+)(plastid)
561230.PC1_0606+
561230.PC1_0605+
561230.PC1_1264+
561230.PC1_2997(>)
561230.PC1_0023+
561230.PC1_1519+
561230.PC1_1514+
561230.PC1_1512+
561230.PC1_0849(+)+
561230.PC1_4119(+)+
561230.PC1_4157(<)
561230.PC1_1650+
561230.PC1_2553+
561230.PC1_2881(>)
561230.PC1_3006(PF16485)
561230.PC1_2605+
561230.PC1_3221(PF04399)
561230.PC1_3225(PF05141)
561230.PC1_0447+
561230.PC1_3250+
561230.PC1_2196(+)(ER)
561230.PC1_2198+
561230.PC1_3911(>)
561230.PC1_1675(+)(PF01501)
561230.PC1_1677(PF01501)
561230.PC1_1676(+)(PF01501)
561230.PC1_1850+
561230.PC1_1857+
561230.PC1_1075+
561230.PC1_1217+
561230.PC1_0925(+)(plastid)
561230.PC1_1691+
561230.PC1_0584(<)
561230.PC1_1526+
561230.PC1_3036+
561230.PC1_3031(>)
561230.PC1_3746+
561230.PC1_3581+
561230.PC1_3582(<)
561230.PC1_3368+
561230.PC1_2182(+)(PF03211)
561230.PC1_2183+
561230.PC1_2167+
561230.PC1_0624+
561230.PC1_3279(>)
561230.PC1_1334+
561230.PC1_1440+
561230.PC1_1446(+)(ER)
561230.PC1_1681(>)
561230.PC1_2588+
561230.PC1_3021+
561230.PC1_3024+
561230.PC1_2373+
561230.PC1_2376+
561230.PC1_3207+
561230.PC1_1964+
561230.PC1_2577(+)
561230.PC1_2574(+)
561230.PC1_3688(+)
561230.PC1_3689(+)
561230.PC1_1056(+)
561230.PC1_1239(+)
561230.PC1_1236(+)
561230.PC1_2600(+)
561230.PC1_1543(+)
561230.PC1_0482(+)
561230.PC1_4251(+)
561230.PC1_3768(+)
561230.PC1_3564(+)
561230.PC1_3164(+)
561230.PC1_3300(+)
561230.PC1_3309(+)
561230.PC1_2365(+)
561230.PC1_3945(+)
561230.PC1_3784(+)
561230.PC1_3781(+)
561230.PC1_1823(+)
561230.PC1_1040(+)
561230.PC1_1950(+)
561230.PC1_4133(+)
561230.PC1_0806(+)
561230.PC1_1408(+)
561230.PC1_4070(+)
561230.PC1_3735(+)
561230.PC1_0377(+)
561230.PC1_3576(+)
561230.PC1_2551(+)
561230.PC1_2229(+)
561230.PC1_0636(+)
561230.PC1_3797(+)
561230.PC1_1031(+)
561230.PC1_2042(+)
561230.PC1_2450(+)
561230.PC1_1810(+)
561230.PC1_0142(+)
561230.PC1_0782(+)
561230.PC1_0784(+)
561230.PC1_3826(+)
561230.PC1_1658(+)
561230.PC1_0364(+)
561230.PC1_0218(+)
561230.PC1_0217(+)
561230.PC1_3145(+)
561230.PC1_3324(+)
561230.PC1_2436(+)
561230.PC1_3438(+)
561230.PC1_1977(+)
561230.PC1_1798(+)
561230.PC1_0179(+)
561230.PC1_1376(+)
561230.PC1_2864(+)
561230.PC1_0729(+)
561230.PC1_3559(+)
561230.PC1_3082(+)
561230.PC1_3158(+)not used
561230.PC1_2201(+)
561230.PC1_2332(+)
561230.PC1_2689(+)
561230.PC1_2687(+)
561230.PC1_1016(+)not used
561230.PC1_2536(+)
561230.PC1_2069(+)
561230.PC1_2594(+)
561230.PC1_2597(+)
561230.PC1_0164(+)
561230.PC1_1344(+)
561230.PC1_4190(+)
561230.PC1_1342(+)
561230.PC1_4255(+)
561230.PC1_3186(+)
561230.PC1_2211(+)
561230.PC1_1002(+)
561230.PC1_0168(+)
561230.PC1_4187(+)
561230.PC1_3939(+)
561230.PC1_0400(+)
561230.PC1_1793(+)
561230.PC1_0700(+)
561230.PC1_0242(+)
561230.PC1_3538(+)
561230.PC1_3623(+)not used
561230.PC1_2469(+)
561230.PC1_3441(+)not used
561230.PC1_2266(+)
561230.PC1_2644(+)
561230.PC1_2009(+)
561230.PC1_3137(+)
561230.PC1_4226(+)
561230.PC1_0743(+)
561230.PC1_1618(+)
561230.PC1_1294(+)
561230.PC1_0522(+)
561230.PC1_1725(+)
561230.PC1_1729(+)
561230.PC1_1403(+)
561230.PC1_4152(+)
561230.PC1_4233(+)
561230.PC1_3506(+)
561230.PC1_3614(+)
561230.PC1_3863(+)
561230.PC1_3290(+)
561230.PC1_3293(+)
561230.PC1_3474(+)
561230.PC1_3275(+)
561230.PC1_2018(+)
561230.PC1_1578(+)
561230.PC1_0510(+)
561230.PC1_0882(+)
561230.PC1_1604(+)
561230.PC1_1778(+)
561230.PC1_0685(+)
561230.PC1_1289(+)
561230.PC1_1932(+)
561230.PC1_1937(+)
561230.PC1_2808(+)
561230.PC1_1733(+)
561230.PC1_1737(+)
561230.PC1_3215(+)
561230.PC1_0464(+)
561230.PC1_0468(+)
561230.PC1_4146(+)
561230.PC1_3192(+)
561230.PC1_0265(+)
561230.PC1_0061(+)
561230.PC1_0060(+)
561230.PC1_0030(+)
561230.PC1_3606(+)
561230.PC1_2640(+)
561230.PC1_3262(+)
561230.PC1_2243(+)
561230.PC1_2248(+)
561230.PC1_1120(+)
561230.PC1_1123(+)
561230.PC1_2732(+)
561230.PC1_0897(+)
561230.PC1_0095(+)
561230.PC1_4170(+)
561230.PC1_2181(+)
561230.PC1_3706(+)
561230.PC1_3382(+)
561230.PC1_3816(+)
561230.PC1_1137(+)
561230.PC1_3928(+)
561230.PC1_0716(+)
561230.PC1_0711(+)
561230.PC1_1621(+)
561230.PC1_0689(+)
561230.PC1_0473(+)
561230.PC1_1662(+)
561230.PC1_2821(+)
561230.PC1_1714(+)
561230.PC1_4179(+)
561230.PC1_1282(+)
561230.PC1_1707(+)
561230.PC1_3335(+)
561230.PC1_2621(+)
561230.PC1_3398(+)
561230.PC1_3395(+)
561230.PC1_2753(+)
561230.PC1_3933(+)
561230.PC1_1614(+)
561230.PC1_0709(+)
561230.PC1_0670(+)
561230.PC1_2837(+)
561230.PC1_3074(+)
561230.PC1_3428(+)
561230.PC1_0297(+)
561230.PC1_0054(+)
561230.PC1_1504(+)
561230.PC1_0483(+)
561230.PC1_4267(+)
561230.PC1_4268(+)
561230.PC1_2637(+)
561230.PC1_3239(+)
561230.PC1_3342(+)
561230.PC1_2298(+)
561230.PC1_2743(+)
561230.PC1_1884(+)
561230.PC1_1084(+)
561230.PC1_0609(+)
561230.PC1_0939(+)
561230.PC1_2993(+)
561230.PC1_0861(+)
561230.PC1_1439(+)
561230.PC1_0331(+)
561230.PC1_3132(+)
561230.PC1_3005(+)
561230.PC1_2608(+)
561230.PC1_3229(+)
561230.PC1_4125(+)
561230.PC1_3234(+)
561230.PC1_3516(+)
561230.PC1_0365(+)
561230.PC1_3358(+)
561230.PC1_3353(+)
561230.PC1_3476(+)
561230.PC1_2779(+)
561230.PC1_4078(+)
561230.PC1_1212(+)
561230.PC1_1210(+)
561230.PC1_1184(+)
561230.PC1_0923(+)
561230.PC1_1697(+)
561230.PC1_3651(+)
561230.PC1_3056(+)
561230.PC1_3952(+)
561230.PC1_2139(+)
561230.PC1_0792(+)
561230.PC1_3107(+)
561230.PC1_3589(+)
561230.PC1_3365(+)
561230.PC1_3699(+)
561230.PC1_3691(+)
561230.PC1_2180(+)
561230.PC1_2186(+)
561230.PC1_0896(+)
561230.PC1_1849(+)
561230.PC1_0698(+)
561230.PC1_0628(+)
561230.PC1_1744(+)
561230.PC1_1201(+)
561230.PC1_0487(+)
561230.PC1_1339(+)
561230.PC1_2138(+)
561230.PC1_0450(+)
561230.PC1_0027(+)
561230.PC1_0557(+)
561230.PC1_4014(+)
561230.PC1_1530(+)
561230.PC1_3757(+)
561230.PC1_2557(+)
561230.PC1_0310(+)
561230.PC1_0862(+)
561230.PC1_3118(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================