Metamenu

Effective results for Laribacter hongkongensis HLHK9 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
557598.LHK_01752(PF00959)(ER)
557598.LHK_02656(PF13436)ER
557598.LHK_01627(PF00959)(ER)
557598.LHK_01558(PF00959)(ER)
557598.LHK_01352(PF04970)mitochondrial
557598.LHK_00807(PF04970)(mitochondrial)
557598.LHK_01525(PF02229)
557598.LHK_02470(PF02229)
557598.LHK_01642(PF04383)
557598.LHK_00418(PF05929)
557598.LHK_01733(PF04383)
557598.LHK_02003(PF00959)
557598.LHK_01320(PF10013)not used
557598.LHK_02583(PF05929)
557598.LHK_02581(PF05929)
557598.LHK_01497(PF09588)
557598.LHK_01353(PF04970)
557598.LHK_01355(PF09588)
557598.LHK_00809(PF09588)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================