Metamenu

Effective results for Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 (eggnog40)

Summary

Number of putative secreted proteins: 759
- Predicted by EffectiveT3: 250 (high confidence), 317 (low confidence)
- Predicted by EffectiveCCBD: 45 within, 32 before, 67 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 84 proteins (45 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553480.PAU_00864(PF13551) (PF13592)(mitochondrial)
553480.PAU_03657(PF13551) (PF13592)(mitochondrial)
553480.PAU_03558PF08275 PF01807 PF13155(mitochondrial)
553480.PAU_03006PF08275 PF01807 PF13155(mitochondrial)
553480.PAU_03307PF01807 PF13155mitochondrial; (mitochondrial)
553480.PAU_00242(>)(mitochondrial)
553480.PAU_00245PF13332(mitochondrial)
553480.PAU_04018+(mitochondrial)
553480.PAU_03864(>)(ER)
553480.PAU_03788(<)ER
553480.PAU_04371+(mitochondrial)
553480.PAU_02786+(mitochondrial)
553480.PAU_01249(<)ER
553480.PAU_02830+(mitochondrial); (plastid)
553480.PAU_00445PF13332mitochondrial
553480.PAU_00443(>)ER
553480.PAU_02939+mitochondrial
553480.PAU_02422(>)ER
553480.PAU_00301+ER; (ER)
553480.PAU_04227(>)ER
553480.PAU_03503(>)(mitochondrial)
553480.PAU_02210++plastid
553480.PAU_02109+(mitochondrial); plastid
553480.PAU_01406+(mitochondrial)
553480.PAU_00970+(>)
553480.PAU_01485PF13332mitochondrial
553480.PAU_01487(PF13518)mitochondrial; (mitochondrial)
553480.PAU_00973q+ER
553480.PAU_00420+(mitochondrial)
553480.PAU_04187(PF13551)(mitochondrial)
553480.PAU_02915+(mitochondrial); (plastid)
553480.PAU_02772+mitochondrial; (mitochondrial)
553480.PAU_02778+(mitochondrial); (plastid)
553480.PAU_01079(PF13518)mitochondrial; (mitochondrial)
553480.PAU_01295+ER
553480.PAU_01855(>)ER
553480.PAU_01859(<)ER; (ER)
553480.PAU_03988(PF13518)mitochondrial; (mitochondrial)
553480.PAU_02348+(ER); (mitochondrial)
553480.PAU_02435+ER
553480.PAU_02662+ER
553480.PAU_01614(>)mitochondrial; (mitochondrial)
553480.PAU_00074(>)ER
553480.PAU_01437+(mitochondrial)
553480.PAU_01548PF13332ER; (ER)
553480.PAU_04063(<)ER; (ER)
553480.PAU_03389+ER
553480.PAU_02039(>)ER
553480.PAU_04383(>)ER
553480.PAU_00955PF08275 PF01807 PF13155
553480.PAU_00171(PF13518)mitochondrial; (mitochondrial)
553480.PAU_00949PF08275 PF01807 PF13155
553480.PAU_00941PF08275 PF01807 PF13155
553480.PAU_01561+(mitochondrial)
553480.PAU_03497(PF13518)mitochondrial; (mitochondrial)
553480.PAU_00615PF13661(mitochondrial)
553480.PAU_04024(>)ER
553480.PAU_04288+
553480.PAU_04287+ER
553480.PAU_00783(>)ER
553480.PAU_03950(PF13518)mitochondrial; (mitochondrial)
553480.PAU_03000PF08275 PF01807 PF13155
553480.PAU_02288PF13332mitochondrial
553480.PAU_02502(>)mitochondrial
553480.PAU_02062(PF13518)mitochondrial; (mitochondrial)
553480.PAU_01984(>)(mitochondrial)
553480.PAU_00963PF08275 PF01807 PF13155
553480.PAU_01163+PF13332(ER)
553480.PAU_03835(>)ER
553480.PAU_03928+(mitochondrial)
553480.PAU_00749(>)(ER)
553480.PAU_02986(>)ER
553480.PAU_01515(<)ER
553480.PAU_01899+ER; (ER)
553480.PAU_03931(<)(mitochondrial)
553480.PAU_00009+(mitochondrial); plastid
553480.PAU_03806+mitochondrial; (mitochondrial)
553480.PAU_00311+ER
553480.PAU_03026PF13332mitochondrial
553480.PAU_03593+(<)plastid
553480.PAU_03108+(<)plastid
553480.PAU_01528(>)ER
553480.PAU_00123(>)ER
553480.PAU_04316(PF06662)ER
553480.PAU_04315(>)ER
553480.PAU_03304+mitochondrial; (mitochondrial)
553480.PAU_03306PF13332mitochondrial
553480.PAU_01358(>)ER
553480.PAU_00246(+)ER
553480.PAU_00336+(plastid)
553480.PAU_03917(>)(ER)
553480.PAU_00482(PF02543) (PF16861)
553480.PAU_04125+(mitochondrial)
553480.PAU_04010+(PF00368)
553480.PAU_03311PF01807 PF13155
553480.PAU_02130(PF02543) (PF16861)
553480.PAU_03679(+)(mitochondrial); mitochondrial
553480.PAU_00780(+)ER; (ER)
553480.PAU_03074(PF13551) (PF13592)
553480.PAU_02305(+)(mitochondrial); (plastid)
553480.PAU_02125(PF02543) (PF16861)
553480.PAU_04147(>)(ER)
553480.PAU_04361(>)(mitochondrial)
553480.PAU_00044(<)(ER)
553480.PAU_02421(+)(mitochondrial)
553480.PAU_02200+(plastid)
553480.PAU_01491+(<)
553480.PAU_01496(+)ER
553480.PAU_02549+(ER)
553480.PAU_01275+plastid
553480.PAU_01874+(mitochondrial)
553480.PAU_00277(+)ER
553480.PAU_01906(PF13551) (PF13592)
553480.PAU_00698+PF03984
553480.PAU_04222(PF13551) (PF13592)
553480.PAU_03566+(plastid)
553480.PAU_03849PF12255 (PF12256)
553480.PAU_00192(PF02661)(mitochondrial)
553480.PAU_02459+(ER)
553480.PAU_03515(+)(mitochondrial)
553480.PAU_02917+PF01764
553480.PAU_02174(<)
553480.PAU_01927+(>)
553480.PAU_03637+(ER)
553480.PAU_03631+(ER)
553480.PAU_02766(+)ER; (ER)
553480.PAU_00308+(>)
553480.PAU_03478++
553480.PAU_01662+(ER)
553480.PAU_02920+PF01764
553480.PAU_03447(+)(>)
553480.PAU_02570+(PF02661)
553480.PAU_03191+plastid
553480.PAU_03178+(>)
553480.PAU_02808+PF00045
553480.PAU_02394(PF02543) (PF16861)
553480.PAU_00898PF12255 (PF12256)
553480.PAU_01542+(mitochondrial)
553480.PAU_01947(+)ER
553480.PAU_01699+(mitochondrial)
553480.PAU_04065(PF02543) (PF16861)
553480.PAU_03411+(mitochondrial)
553480.PAU_01553(+)(ER)
553480.PAU_03393(+)(>)(mitochondrial)
553480.PAU_02609+plastid
553480.PAU_03014+(plastid)
553480.PAU_02727+(plastid)
553480.PAU_01086(+)(mitochondrial)
553480.PAU_01392+(PF16485)
553480.PAU_01577(<)(mitochondrial)
553480.PAU_00286(+)(mitochondrial); plastid
553480.PAU_00625(PF13551) (PF13592)
553480.PAU_00628(+)mitochondrial
553480.PAU_02843(+)ER
553480.PAU_01986+(>)
553480.PAU_01769(PF13551) (PF13592)
553480.PAU_00368(+)(ER)
553480.PAU_03288+(plastid)
553480.PAU_03920+(mitochondrial)
553480.PAU_03218(>)plastid
553480.PAU_01512(+)(mitochondrial); (plastid)
553480.PAU_03846+PF00045
553480.PAU_02883PF08964 PF14564
553480.PAU_02884PF08964 PF14564
553480.PAU_02089(>)
553480.PAU_03002(<)(mitochondrial)
553480.PAU_02646(+)(mitochondrial)
553480.PAU_02649++
553480.PAU_03940+(mitochondrial)
553480.PAU_03791++
553480.PAU_01056(+)ER
553480.PAU_00046(+)(ER)
553480.PAU_01754(+)(ER)
553480.PAU_00807(<)(mitochondrial)
553480.PAU_04256+(ER)
553480.PAU_02540+
553480.PAU_00240(PF10014)
553480.PAU_00066+
553480.PAU_00481+
553480.PAU_03862+
553480.PAU_03263+
553480.PAU_02794+
553480.PAU_03315+
553480.PAU_02225+
553480.PAU_02226(PF00368)
553480.PAU_02222(>)
553480.PAU_00233+
553480.PAU_02134+
553480.PAU_02206+
553480.PAU_00924+
553480.PAU_00927+
553480.PAU_00921+not used
553480.PAU_01327(+)(mitochondrial)
553480.PAU_01321+
553480.PAU_03681+
553480.PAU_00819+not used
553480.PAU_01581+not used
553480.PAU_01039+
553480.PAU_01033+
553480.PAU_03968(<)
553480.PAU_00257+
553480.PAU_00255(<)
553480.PAU_01256+
553480.PAU_01257(PF02661)
553480.PAU_01250(>)
553480.PAU_03613(>)
553480.PAU_01811+
553480.PAU_00473+
553480.PAU_03419+not used
553480.PAU_03071(PF02661)
553480.PAU_03076(+)+
553480.PAU_03894+
553480.PAU_03520+not used
553480.PAU_02411+
553480.PAU_02234+
553480.PAU_02569+
553480.PAU_02129(<)
553480.PAU_04104(>)
553480.PAU_01195+
553480.PAU_01199(>)
553480.PAU_01333+
553480.PAU_00865+
553480.PAU_00989(+)(plastid)
553480.PAU_01023(>)
553480.PAU_01021+
553480.PAU_03146+
553480.PAU_00984+
553480.PAU_00260+
553480.PAU_01807+
553480.PAU_03793+
553480.PAU_03066+
553480.PAU_03060+
553480.PAU_03080(+)(ER)
553480.PAU_04215(<)
553480.PAU_02429+
553480.PAU_02934(<)
553480.PAU_02813+
553480.PAU_03330(>)
553480.PAU_03332+
553480.PAU_03334+
553480.PAU_03337+
553480.PAU_04111+
553480.PAU_02110+
553480.PAU_01208+
553480.PAU_02228+
553480.PAU_03937(>)
553480.PAU_04267(>)
553480.PAU_01658+
553480.PAU_01651+
553480.PAU_00871(>)
553480.PAU_01016(+)(>)
553480.PAU_01302(+)(mitochondrial)
553480.PAU_01303(>)
553480.PAU_01277(+)(plastid)
553480.PAU_03659+not used
553480.PAU_01907+
553480.PAU_00457+
553480.PAU_00699(+)PF03984
553480.PAU_00056+
553480.PAU_00594+not used
553480.PAU_03340+
553480.PAU_03341+
553480.PAU_02326(>)
553480.PAU_02706+
553480.PAU_02101(>)
553480.PAU_02705+
553480.PAU_01482+
553480.PAU_01316+
553480.PAU_01647+
553480.PAU_00846(>)
553480.PAU_00844+
553480.PAU_01461PF01764
553480.PAU_03034+
553480.PAU_00516+
553480.PAU_00207+
553480.PAU_04162+
553480.PAU_01912(>)
553480.PAU_01915+
553480.PAU_00427+
553480.PAU_03646+not used
553480.PAU_00033(>)
553480.PAU_00737+
553480.PAU_03510(PF02661)
553480.PAU_02918PF01764
553480.PAU_02919PF01764
553480.PAU_03429+
553480.PAU_03352+
553480.PAU_02359+
553480.PAU_02346+
553480.PAU_01882+not used
553480.PAU_01676(+)(ER)
553480.PAU_00859+
553480.PAU_01109+
553480.PAU_01454+
553480.PAU_01453+
553480.PAU_00216+
553480.PAU_01924+
553480.PAU_01922(>)
553480.PAU_00434+
553480.PAU_04030(<)
553480.PAU_00721PF01764
553480.PAU_02587+
553480.PAU_03184+
553480.PAU_02907+
553480.PAU_02906(>)
553480.PAU_03361(<)not used
553480.PAU_03365+
553480.PAU_02168+
553480.PAU_02163+
553480.PAU_02016(>)
553480.PAU_01892+
553480.PAU_00959+
553480.PAU_01596+
553480.PAU_01063+
553480.PAU_01061(PF07720)
553480.PAU_03437+
553480.PAU_00880+
553480.PAU_00223+
553480.PAU_00714+
553480.PAU_00712+not used
553480.PAU_02974+
553480.PAU_02489PF01764
553480.PAU_02484+
553480.PAU_02480(+)+not used
553480.PAU_02483PF01764
553480.PAU_03373+
553480.PAU_02802+
553480.PAU_02396(<)
553480.PAU_02624+
553480.PAU_03449(>)
553480.PAU_02021+not used
553480.PAU_01721+
553480.PAU_01722+not used
553480.PAU_01724+
553480.PAU_03600(PF04383)
553480.PAU_04078+
553480.PAU_00899PF03538
553480.PAU_00144+
553480.PAU_00527+
553480.PAU_04087+
553480.PAU_00705(+)(PF02661)
553480.PAU_00477+
553480.PAU_02069+
553480.PAU_02997(+)(plastid)
553480.PAU_02494PF01764
553480.PAU_02704+
553480.PAU_02819+
553480.PAU_02149+not used
553480.PAU_02036+
553480.PAU_02099+
553480.PAU_01604+
553480.PAU_00830(+)(mitochondrial)
553480.PAU_01112(>)
553480.PAU_01043+
553480.PAU_00600+
553480.PAU_01421+
553480.PAU_00953+
553480.PAU_00393+
553480.PAU_00397+
553480.PAU_00394+
553480.PAU_00399+
553480.PAU_03733+
553480.PAU_01957+
553480.PAU_03971+
553480.PAU_04098+
553480.PAU_00770+
553480.PAU_02954+
553480.PAU_03395+
553480.PAU_02826(+)(<)
553480.PAU_02603+
553480.PAU_02600(>)
553480.PAU_00883+
553480.PAU_01631+
553480.PAU_01704(>)
553480.PAU_02369+
553480.PAU_00314(+)(mitochondrial)
553480.PAU_01567(+)(plastid)
553480.PAU_01565+
553480.PAU_00015+
553480.PAU_00549+
553480.PAU_00548(<)
553480.PAU_00762+
553480.PAU_04272+
553480.PAU_02942+
553480.PAU_02360+
553480.PAU_03837+
553480.PAU_01362(>)
553480.PAU_03239+
553480.PAU_02611(+)+
553480.PAU_02614+
553480.PAU_02057PF03538
553480.PAU_04259+
553480.PAU_01710+
553480.PAU_01391+
553480.PAU_01393+
553480.PAU_00978+
553480.PAU_00378(+)(plastid)
553480.PAU_00371+
553480.PAU_00372+
553480.PAU_00288+
553480.PAU_00289+
553480.PAU_00287+
553480.PAU_00751PF13661
553480.PAU_04056+
553480.PAU_03717(PF03945)
553480.PAU_03487(>)
553480.PAU_00623(>)
553480.PAU_00621PF13661
553480.PAU_02449PF01764
553480.PAU_02991(PF01823)
553480.PAU_02440+
553480.PAU_02445+
553480.PAU_02533+
553480.PAU_02840+
553480.PAU_03223+
553480.PAU_03226PF01764
553480.PAU_03225(+)(ER)
553480.PAU_02669(<)
553480.PAU_02199+
553480.PAU_02190+
553480.PAU_02285+
553480.PAU_02266(>)
553480.PAU_02375+
553480.PAU_02157+
553480.PAU_02155+
553480.PAU_01981(>)
553480.PAU_00566+
553480.PAU_03926(<)not used
553480.PAU_03921+
553480.PAU_00037(<)
553480.PAU_00745(PF02661)
553480.PAU_03035+
553480.PAU_00632+
553480.PAU_03101(PF04383)
553480.PAU_02452PF01764
553480.PAU_02524+
553480.PAU_01091(<)
553480.PAU_02678+
553480.PAU_02674(+)(PF10014)
553480.PAU_02180+
553480.PAU_04252+
553480.PAU_02187+
553480.PAU_01145+
553480.PAU_01776(<)
553480.PAU_01773+not used
553480.PAU_03452+
553480.PAU_00358PF04677
553480.PAU_01203+
553480.PAU_01207+
553480.PAU_02588+
553480.PAU_03935+
553480.PAU_03932+
553480.PAU_00131(>)
553480.PAU_02462(+)(mitochondrial)
553480.PAU_03025+
553480.PAU_02514(<)
553480.PAU_03594+
553480.PAU_03597+
553480.PAU_03201(+)+
553480.PAU_02246+
553480.PAU_02245+
553480.PAU_02088(PF02661)
553480.PAU_03714+
553480.PAU_02082+
553480.PAU_02641+
553480.PAU_03107+
553480.PAU_03104+
553480.PAU_00906PF13332
553480.PAU_00901PF03538
553480.PAU_01690+
553480.PAU_01523+
553480.PAU_02868+
553480.PAU_03902(<)
553480.PAU_00012+
553480.PAU_00129+
553480.PAU_03270(+)(plastid)
553480.PAU_03300+
553480.PAU_03309+
553480.PAU_02255+
553480.PAU_02572+
553480.PAU_02573+
553480.PAU_01752+not used
553480.PAU_02575+
553480.PAU_00931+
553480.PAU_01433+
553480.PAU_01688+
553480.PAU_01352+
553480.PAU_04257+
553480.PAU_01533(+)(>)
553480.PAU_00800(+)(<)
553480.PAU_01229(+)
553480.PAU_01226(+)
553480.PAU_03915(+)
553480.PAU_03464(+)
553480.PAU_00334(+)
553480.PAU_03268(+)not used
553480.PAU_02401(+)
553480.PAU_02792(+)
553480.PAU_03310(+)
553480.PAU_02223(+)
553480.PAU_02750(+)
553480.PAU_00417(+)
553480.PAU_01325(+)not used
553480.PAU_01322(+)not used
553480.PAU_01589(+)
553480.PAU_00254(+)
553480.PAU_01816(+)
553480.PAU_00470(+)
553480.PAU_00475(+)
553480.PAU_03079(+)
553480.PAU_03091(+)
553480.PAU_02306(+)
553480.PAU_01342(+)
553480.PAU_03320(+)
553480.PAU_03044(+)
553480.PAU_01198(+)
553480.PAU_01338(+)
553480.PAU_00866(+)
553480.PAU_00867(+)
553480.PAU_01022(+)
553480.PAU_01026(+)not used
553480.PAU_01024(+)
553480.PAU_00269(+)
553480.PAU_03790(+)
553480.PAU_03409(+)
553480.PAU_03087(+)
553480.PAU_02680(+)
553480.PAU_02111(+)
553480.PAU_01650(+)
553480.PAU_01653(+)
553480.PAU_01655(+)not used
553480.PAU_01657(+)
553480.PAU_01018(+)
553480.PAU_01017(+)
553480.PAU_01015(+)
553480.PAU_01475(+)not used
553480.PAU_00300(+)
553480.PAU_01279(+)
553480.PAU_04173(+)
553480.PAU_01908(+)
553480.PAU_04191(+)
553480.PAU_00696(+)
553480.PAU_00694(+)
553480.PAU_00058(+)
553480.PAU_03734(+)
553480.PAU_04352(+)
553480.PAU_02923(+)
553480.PAU_02925(+)
553480.PAU_02322(+)
553480.PAU_02325(+)
553480.PAU_02697(+)
553480.PAU_02105(+)
553480.PAU_00641(+)
553480.PAU_03564(+)
553480.PAU_01648(+)
553480.PAU_00995(+)not used
553480.PAU_01262(+)
553480.PAU_01863(+)
553480.PAU_00518(+)
553480.PAU_04183(+)
553480.PAU_01536(+)not used
553480.PAU_04347(+)
553480.PAU_03353(+)
553480.PAU_02770(+)
553480.PAU_04327(+)
553480.PAU_01997(+)
553480.PAU_02171(+)
553480.PAU_02710(+)
553480.PAU_02434(+)
553480.PAU_00854(+)
553480.PAU_02258(+)
553480.PAU_01075(+)
553480.PAU_00981(+)
553480.PAU_00505(+)
553480.PAU_00214(+)
553480.PAU_00213(+)
553480.PAU_00431(+)
553480.PAU_03740(+)
553480.PAU_03747(+)
553480.PAU_00723(+)
553480.PAU_01183(+)
553480.PAU_00755(+)not used
553480.PAU_04209(+)
553480.PAU_04248(+)
553480.PAU_03438(+)
553480.PAU_03363(+)
553480.PAU_02767(+)
553480.PAU_02930(+)
553480.PAU_02343(+)
553480.PAU_02167(+)
553480.PAU_02165(+)
553480.PAU_02164(+)
553480.PAU_02933(+)
553480.PAU_01060(+)
553480.PAU_01281(+)
553480.PAU_03430(+)
553480.PAU_00536(+)
553480.PAU_00153(+)
553480.PAU_00085(+)
553480.PAU_00713(+)
553480.PAU_03197(+)not used
553480.PAU_03196(+)
553480.PAU_02971(+)
553480.PAU_03445(+)
553480.PAU_03173(+)
553480.PAU_03175(+)
553480.PAU_02801(+)
553480.PAU_02803(+)
553480.PAU_02804(+)
553480.PAU_02392(+)
553480.PAU_02623(+)
553480.PAU_02158(+)not used
553480.PAU_02023(+)
553480.PAU_02660(+)
553480.PAU_03119(+)
553480.PAU_01434(+)
553480.PAU_00896(+)
553480.PAU_00523(+)
553480.PAU_00522(+)
553480.PAU_03967(+)
553480.PAU_04081(+)
553480.PAU_04391(+)
553480.PAU_03145(+)
553480.PAU_02709(+)
553480.PAU_02812(+)
553480.PAU_03458(+)
553480.PAU_03459(+)
553480.PAU_00948(+)
553480.PAU_01049(+)
553480.PAU_01116(+)
553480.PAU_01134(+)not used
553480.PAU_00954(+)
553480.PAU_01224(+)not used
553480.PAU_01557(+)
553480.PAU_01554(+)
553480.PAU_03973(+)not used
553480.PAU_04093(+)
553480.PAU_03777(+)
553480.PAU_03779(+)
553480.PAU_02952(+)
553480.PAU_03155(+)
553480.PAU_03560+
553480.PAU_02042(+)
553480.PAU_01053(+)
553480.PAU_02605(+)
553480.PAU_01514(+)
553480.PAU_01093(+)
553480.PAU_01098(+)
553480.PAU_00157(+)
553480.PAU_00385(+)
553480.PAU_01895(+)
553480.PAU_00388(+)
553480.PAU_01961(+)
553480.PAU_00540(+)
553480.PAU_03011(+)
553480.PAU_02941(+)
553480.PAU_00612(+)
553480.PAU_00619(+)
553480.PAU_03830(+)
553480.PAU_04283(+)
553480.PAU_02835(+)
553480.PAU_02837(+)
553480.PAU_02619(+)
553480.PAU_02615(+)
553480.PAU_02617(+)
553480.PAU_03769(+)
553480.PAU_02059(+)
553480.PAU_01629(+)
553480.PAU_00741(+)
553480.PAU_04250(+)
553480.PAU_01714(+)
553480.PAU_03152a(+)
553480.PAU_00743(+)
553480.PAU_01087(+)
553480.PAU_01576(+)
553480.PAU_00283(+)
553480.PAU_01975(+)
553480.PAU_01973(+)
553480.PAU_00574(+)not used
553480.PAU_03956(+)
553480.PAU_03719(+)
553480.PAU_03718(+)
553480.PAU_02994(+)
553480.PAU_02999(+)
553480.PAU_03829(+)
553480.PAU_02532(+)
553480.PAU_03821(+)
553480.PAU_02539(+)
553480.PAU_03221(+)
553480.PAU_02287(+)
553480.PAU_01767(+)
553480.PAU_00895(+)
553480.PAU_04169(+)not used
553480.PAU_00968(+)
553480.PAU_00894(+)
553480.PAU_01364(+)
553480.PAU_01161(+)
553480.PAU_01502(+)
553480.PAU_00290(+)
553480.PAU_00108(+)
553480.PAU_03036+
553480.PAU_00038(+)
553480.PAU_03032(+)
553480.PAU_04026(+)
553480.PAU_03584(+)
553480.PAU_03850(+)
553480.PAU_01147(+)not used
553480.PAU_02293(+)
553480.PAU_01383(+)
553480.PAU_00670(+)
553480.PAU_03802(+)
553480.PAU_02188(+)
553480.PAU_01385(+)
553480.PAU_03509(+)
553480.PAU_00438(+)
553480.PAU_01467(+)not used
553480.PAU_03456(+)
553480.PAU_03454(+)
553480.PAU_01370(+)
553480.PAU_01513(+)
553480.PAU_01510(+)
553480.PAU_00822(+)
553480.PAU_01993(+)
553480.PAU_01995(+)
553480.PAU_00389(+)
553480.PAU_00006(+)
553480.PAU_04036(+)
553480.PAU_00132(+)
553480.PAU_00137(+)
553480.PAU_04102(+)
553480.PAU_03020(+)
553480.PAU_03023(+)not used
553480.PAU_02861(+)
553480.PAU_02643(+)
553480.PAU_02640(+)
553480.PAU_03517(+)
553480.PAU_01155(+)
553480.PAU_03139(+)
553480.PAU_01235(+)
553480.PAU_01233(+)
553480.PAU_01835(+)
553480.PAU_02444(+)
553480.PAU_00019(+)
553480.PAU_03799(+)
553480.PAU_03471(+)
553480.PAU_03058(+)
553480.PAU_03059(+)
553480.PAU_03816(+)not used
553480.PAU_02891(+)
553480.PAU_02474(+)
553480.PAU_03303(+)
553480.PAU_02095(+)
553480.PAU_02659(+)
553480.PAU_01058(+)
553480.PAU_02574(+)
553480.PAU_02576(+)
553480.PAU_01918(+)
553480.PAU_01681(+)
553480.PAU_01537(+)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.8 (18/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 3.5 (28/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================