Effective results for Campylobacter gracilis RM3268 (eggnog40)

Summary

Number of putative secreted proteins: 10
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 10 proteins (2 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553220.CAMGR0001_0663(PF15588)(mitochondrial)
553220.CAMGR0001_2300(PF05935)ER
553220.CAMGR0001_1686(PF13597)mitochondrial
553220.CAMGR0001_0125(PF05935)ER
553220.CAMGR0001_1081(PF02689)(mitochondrial)
553220.CAMGR0001_1061(PF03162)ER
553220.CAMGR0001_1869(PF13597)
553220.CAMGR0001_1868(PF13597)not used
553220.CAMGR0001_0434PF02516
553220.CAMGR0001_2013PF02516

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================