Effective results for Gardnerella vaginalis 409-05 (eggnog40)

Summary

Number of putative secreted proteins: 7
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 7 proteins (0 high, 7 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
553190.HMPREF0424_0946				(PF11070)	ER; (ER)
553190.HMPREF0424_0610				(PF03423)	ER
553190.HMPREF0424_0605				(PF01121)	(mitochondrial)
553190.HMPREF0424_0696				(PF13151)
553190.HMPREF0424_0603				(PF01121)	not used
553190.HMPREF0424_0865				(PF11969)
553190.HMPREF0424_1197				(PF08354)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================