Metamenu

Effective results for Bifidobacterium animalis subsp. lactis BB-12 (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 12 proteins (4 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
552531.BIF_02150(PF05704)mitochondrial; (mitochondrial)
552531.BIF_00834PF04916mitochondrial
552531.BIF_01419(PF14336)
552531.BIF_01595PF05691
552531.BIF_01810(PF11969)
552531.BIF_01294(PF03577)
552531.BIF_02226PF08213not used
552531.BIF_01120PF08433
552531.BIF_00783(PF08354)
552531.BIF_00122(PF03959)
552531.BIF_01093(PF03577)
552531.BIF_01092(PF03577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================