Effective results for Gemella haemolysans ATCC 10379 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 23 proteins (5 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
546270.GEMHA0001_0590				(PF08002)	(mitochondrial); mitochondrial
546270.GEMHA0001_1128				(PF05704)	(mitochondrial)
546270.GEMHA0001_1141				PF02916	(ER)
546270.GEMHA0001_1096				(PF04991)	ER
546270.GEMHA0001_1098				(PF04991)	(ER)
546270.GEMHA0001_0145				(PF05448)	(mitochondrial); mitochondrial
546270.GEMHA0001_1698				PF00380	(mitochondrial)
546270.GEMHA0001_1251				(PF03848)	(plastid)
546270.GEMHA0001_0924				PF02987
546270.GEMHA0001_1089				(PF01633)
546270.GEMHA0001_0053				(PF10437)
546270.GEMHA0001_1069				(PF00070)
546270.GEMHA0001_0001				PF02987	not used
546270.GEMHA0001_0712				PF00380	not used
546270.GEMHA0001_1247				(PF03848)
546270.GEMHA0001_0379				(PF01633)
546270.GEMHA0001_0402				(PF08002)
546270.GEMHA0001_0411				(PF08002)	not used
546270.GEMHA0001_0984				(PF05448)
546270.GEMHA0001_1172				(PF10437)
546270.GEMHA0001_1174				(PF10437)
546270.GEMHA0001_1135				(PF04991)
546270.GEMHA0001_0144				(PF05448)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================