Metamenu

Effective results for Neisseria flavescens NRL30031/H210 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 17 proteins (0 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546264.NEIFLAOT_00021(PF09511) (PF06414)(mitochondrial)
546264.NEIFLAOT_01114(PF05076)(mitochondrial)
546264.NEIFLAOT_00025(PF14413) (PF04446)
546264.NEIFLAOT_02324(PF01501)
546264.NEIFLAOT_02325(PF01501)
546264.NEIFLAOT_02584(PF01501)
546264.NEIFLAOT_01611(PF03235)
546264.NEIFLAOT_01115(PF05076)
546264.NEIFLAOT_01125(PF05076)
546264.NEIFLAOT_00673(PF16804)
546264.NEIFLAOT_00843(PF03235)
546264.NEIFLAOT_00448(PF11969)
546264.NEIFLAOT_01612(PF03235)
546264.NEIFLAOT_02087(PF03235)
546264.NEIFLAOT_02239(PF03235)
546264.NEIFLAOT_02148(PF06414)
546264.NEIFLAOT_00787(PF05686)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================