Effective results for Thermanaerovibrio acidaminovorans DSM 6589 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 24 proteins (0 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525903.Taci_0258				(PF00871)	(mitochondrial)
525903.Taci_0860				(PF01813)	(mitochondrial)
525903.Taci_0522				(PF01992)	(ER)
525903.Taci_0524				(PF01813)	(mitochondrial)
525903.Taci_1260				(PF00209)	ER
525903.Taci_0381				(PF00209)	ER; (ER)
525903.Taci_1391				(PF00209)	(ER)
525903.Taci_0454				(PF00871)	(plastid)
525903.Taci_0521				(PF01496)	(ER)
525903.Taci_0915				(PF07837) (PF02971)
525903.Taci_0518				(PF01991)
525903.Taci_0519				(PF01990)
525903.Taci_1256				(PF00209)
525903.Taci_1257				(PF14336)
525903.Taci_1105				(PF00871)
525903.Taci_0855				(PF01991)
525903.Taci_0857				(PF01990)
525903.Taci_0853				(PF01496)
525903.Taci_0858				(PF16886)
525903.Taci_0517				(PF16886)
525903.Taci_0722				(PF00209)
525903.Taci_0590				(PF00871)
525903.Taci_0591				(PF00871)
525903.Taci_0856				(PF01992)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================