Effective results for Corynebacterium striatum ATCC 6940 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 20 proteins (8 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525268.HMPREF0308_2002				(PF08310)	(ER); (mitochondrial)
525268.HMPREF0308_0351				(PF08310)	ER; (ER)
525268.HMPREF0308_2239				PF09683	ER
525268.HMPREF0308_1981				(PF08310)	(mitochondrial)
525268.HMPREF0308_0911				(PF08310)	ER
525268.HMPREF0308_2251				(PF08310)	ER
525268.HMPREF0308_1609				PF09683	ER; (ER)
525268.HMPREF0308_1354				(PF08354)	(plastid)
525268.HMPREF0308_1741				PF01490
525268.HMPREF0308_1373				PF08213	not used
525268.HMPREF0308_0400				(PF01195)
525268.HMPREF0308_1307				(PF14078)
525268.HMPREF0308_1780				(PF14078)
525268.HMPREF0308_2510				PF09683
525268.HMPREF0308_2391				(PF05495)
525268.HMPREF0308_0394				(PF01195)
525268.HMPREF0308_0254				(PF08354)
525268.HMPREF0308_1728				PF01490
525268.HMPREF0308_1759				PF01490
525268.HMPREF0308_1837				PF01490

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================