Effective results for Corynebacterium lipophiloflavum DSM 44291 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 28 proteins (1 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525263.HMPREF0298_0923				(PF03596)	ER
525263.HMPREF0298_0063				(PF03275)	(ER)
525263.HMPREF0298_1811				(PF00872)	(mitochondrial)
525263.HMPREF0298_0533				(PF01195)	(mitochondrial)
525263.HMPREF0298_1711				(PF00872)	(mitochondrial)
525263.HMPREF0298_0529				(PF01195)	(plastid)
525263.HMPREF0298_2283				(PF11625)
525263.HMPREF0298_0757				(PF02224)
525263.HMPREF0298_1712				(PF00872)	not used
525263.HMPREF0298_0929				(PF00872)	not used
525263.HMPREF0298_2064				PF08213	not used
525263.HMPREF0298_0937				(PF00872)
525263.HMPREF0298_0079				(PF03275)	not used
525263.HMPREF0298_0669				(PF00872)	not used
525263.HMPREF0298_1051				(PF04760)
525263.HMPREF0298_1636				(PF02224)
525263.HMPREF0298_1812				(PF00872)
525263.HMPREF0298_2370				(PF00872)
525263.HMPREF0298_0828				(PF00872)
525263.HMPREF0298_1710				(PF00872)	not used
525263.HMPREF0298_1365				(PF04760)
525263.HMPREF0298_1366				(PF04760)	not used
525263.HMPREF0298_2294				(PF00872)
525263.HMPREF0298_2296				(PF03596)
525263.HMPREF0298_2292				(PF11625)
525263.HMPREF0298_1654				(PF00872)	not used
525263.HMPREF0298_1657				(PF00872)
525263.HMPREF0298_1656				(PF03275)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================