Metamenu

Effective results for Bifidobacterium angulatum DSM 20098 = JCM 7096 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
518635.BIFANG_03642(PF00686)ER
518635.BIFANG_03573(PF05738)ER
518635.BIFANG_02735(PF06541)ER
518635.BIFANG_02042(PF06541)ER
518635.BIFANG_02058(PF05738)ER
518635.BIFANG_03228(PF06541)ER
518635.BIFANG_03574(PF05738)ER
518635.BIFANG_02092(PF05738)ER
518635.BIFANG_02093(PF05738)(mitochondrial)
518635.BIFANG_03651(PF00686)
518635.BIFANG_02914(PF02224)
518635.BIFANG_02771(PF16565)
518635.BIFANG_03579(PF08354)
518635.BIFANG_02037(PF03577)
518635.BIFANG_03707(PF03577)
518635.BIFANG_03706(PF03577)
518635.BIFANG_03227(PF06541)
518635.BIFANG_03029(PF02224)
518635.BIFANG_02881(PF01788)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================