Effective results for Citrobacter youngae ATCC 29220 (eggnog40)
Summary
Number of putative secreted proteins: 832
- Predicted by EffectiveT3: 190 (high confidence), 348 (low confidence)
- Predicted by EffectiveCCBD: 37 within, 27 before, 41 behind expected region 25..70aa
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 147 proteins (0 high, 147 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
500640.CIT292_06959 | + | + | ER | ||
500640.CIT292_06346 | (PF03313) (PF03315) | (mitochondrial) | |||
500640.CIT292_06317 | (PF08125) (PF01232) | (mitochondrial) | |||
500640.CIT292_08631 | + | (>) | plastid | ||
500640.CIT292_09216 | (>) | ER | |||
500640.CIT292_09217 | (PF03797) | ER | |||
500640.CIT292_10392 | (PF08125) (PF01232) | (mitochondrial) | |||
500640.CIT292_06490 | + | ER | |||
500640.CIT292_06077 | + | (mitochondrial); plastid | |||
500640.CIT292_10677 | (PF00577) | ER | |||
500640.CIT292_08133 | (>) | ER | |||
500640.CIT292_10918 | (PF00465) | (mitochondrial) | |||
500640.CIT292_09008 | + | (mitochondrial) | |||
500640.CIT292_06803 | (PF01204) | (mitochondrial) | |||
500640.CIT292_09484 | + | ER | |||
500640.CIT292_09712 | (<) | ER | |||
500640.CIT292_09717 | (PF00577) | ER | |||
500640.CIT292_09718 | (PF00345) | ER | |||
500640.CIT292_06487 | (<) | ER | |||
500640.CIT292_06273 | (PF00384) | mitochondrial; (mitochondrial) | |||
500640.CIT292_06668 | + | (mitochondrial); (plastid) | |||
500640.CIT292_09873 | + | (mitochondrial) | |||
500640.CIT292_08477 | (PF05231) | ER | |||
500640.CIT292_07796 | (PF16327) | ER | |||
500640.CIT292_09701 | (PF03222) | (ER) | |||
500640.CIT292_06589 | (PF00345) | ER | |||
500640.CIT292_10915 | (PF00939) | ER | |||
500640.CIT292_10355 | + | ER; plastid | |||
500640.CIT292_06614 | + | (ER) | |||
500640.CIT292_07312 | (>) | ER | |||
500640.CIT292_10614 | + | mitochondrial; (mitochondrial) | |||
500640.CIT292_07180 | (PF00465) | mitochondrial; ER | |||
500640.CIT292_07451 | + | ER; (ER) | |||
500640.CIT292_08045 | (PF00939) | ER | |||
500640.CIT292_07234 | + | ER | |||
500640.CIT292_07239 | + | ER | |||
500640.CIT292_09249 | + | (PF08125) (PF01232) | |||
500640.CIT292_08465 | (>) | ER | |||
500640.CIT292_08469 | (PF03797) | ER; (ER) | |||
500640.CIT292_10296 | (PF01204) | ER | |||
500640.CIT292_09733 | (<) | (ER) | |||
500640.CIT292_05961 | (PF13347) | mitochondrial | |||
500640.CIT292_06590 | (PF00577) | ER | |||
500640.CIT292_06283 | (PF16327) | ER | |||
500640.CIT292_06285 | (PF03918) | ER | |||
500640.CIT292_06276 | + | (ER) | |||
500640.CIT292_08073 | + | ER | |||
500640.CIT292_08671 | (PF00577) | (ER) | |||
500640.CIT292_08925 | + | ER | |||
500640.CIT292_09031 | + | ER | |||
500640.CIT292_10023 | + | ER | |||
500640.CIT292_06454 | (PF05231) | ER | |||
500640.CIT292_10331 | (PF03797) | (mitochondrial) | |||
500640.CIT292_10934 | (<) | (ER) | |||
500640.CIT292_10036 | + | (ER) | |||
500640.CIT292_08719 | (PF03797) | ER | |||
500640.CIT292_08398 | + | (ER); ER | |||
500640.CIT292_10742 | (PF03222) | (ER); ER | |||
500640.CIT292_07521 | (PF00384) | (mitochondrial); mitochondrial | |||
500640.CIT292_10815 | (PF01204) | ER | |||
500640.CIT292_06712 | (>) | (mitochondrial); ER | |||
500640.CIT292_07396 | (>) | (ER) | |||
500640.CIT292_08011 | (PF00939) | ER | |||
500640.CIT292_10483 | + | ER | |||
500640.CIT292_10865 | + | (mitochondrial) | |||
500640.CIT292_06367 | (>) | mitochondrial | |||
500640.CIT292_07417 | (>) | ER | |||
500640.CIT292_07361 | (PF00384) | mitochondrial; (mitochondrial) | |||
500640.CIT292_08822 | + | (mitochondrial) | |||
500640.CIT292_08912 | (+) | (PF00939) | ER | ||
500640.CIT292_08911 | (PF00939) | ER | |||
500640.CIT292_09173 | + | ER | |||
500640.CIT292_09172 | + | ER | |||
500640.CIT292_10615 | + | mitochondrial | |||
500640.CIT292_10787 | (PF03313) (PF03315) | (plastid) | |||
500640.CIT292_09775 | (PF03313) (PF03315) | (plastid) | |||
500640.CIT292_08213 | (PF00939) | ER | |||
500640.CIT292_10870 | (PF00939) | ER | |||
500640.CIT292_06394 | (PF00577) | ER | |||
500640.CIT292_06393 | (PF00345) | ER | |||
500640.CIT292_06773 | + | ER | |||
500640.CIT292_06081 | + | ER | |||
500640.CIT292_10385 | + | ER | |||
500640.CIT292_07599 | + | ER | |||
500640.CIT292_09501 | (PF00345) | (ER) | |||
500640.CIT292_07716 | (>) | mitochondrial | |||
500640.CIT292_10511 | (PF05231) | ER | |||
500640.CIT292_10848 | (PF03797) | ER | |||
500640.CIT292_06747 | (>) | ER | |||
500640.CIT292_07161 | (PF00939) | ER | |||
500640.CIT292_09237 | + | (ER) | |||
500640.CIT292_09372 | (PF13347) | ER | |||
500640.CIT292_10678 | (PF00345) | ER | |||
500640.CIT292_06998 | + | ER | |||
500640.CIT292_11117 | (>) | ER | |||
500640.CIT292_09412 | (<) | ER | |||
500640.CIT292_09569 | + | mitochondrial | |||
500640.CIT292_09894 | (PF05231) | (ER) | |||
500640.CIT292_09298 | (>) | ER | |||
500640.CIT292_10550 | + | ER | |||
500640.CIT292_07210 | + | ER | |||
500640.CIT292_11124 | (PF00384) | (mitochondrial); mitochondrial | |||
500640.CIT292_07815 | + | ER | |||
500640.CIT292_11059 | (PF00345) | ER | |||
500640.CIT292_08793 | + | ER | |||
500640.CIT292_07252 | + | ER | |||
500640.CIT292_06790 | (<) | ER | |||
500640.CIT292_10452 | (PF01116) | (mitochondrial) | |||
500640.CIT292_06029 | + | ER | |||
500640.CIT292_07135 | (>) | mitochondrial; (mitochondrial) | |||
500640.CIT292_07794 | (PF03918) | ER | |||
500640.CIT292_11131 | (PF16327) | ER | |||
500640.CIT292_10397 | + | (mitochondrial) | |||
500640.CIT292_09882 | + | ER | |||
500640.CIT292_06522 | (PF10662) | mitochondrial | |||
500640.CIT292_09309 | + | mitochondrial; (mitochondrial) | |||
500640.CIT292_10042 | (<) | ER | |||
500640.CIT292_06017 | (PF05231) | ER | |||
500640.CIT292_08299 | (PF00345) | ER | |||
500640.CIT292_08298 | (PF00577) | ER; (ER) | |||
500640.CIT292_07656 | (PF00345) | ER | |||
500640.CIT292_07658 | (PF00577) | (mitochondrial) | |||
500640.CIT292_07659 | (+) | + | (PF00345) | (plastid) | |
500640.CIT292_11140 | (>) | (mitochondrial) | |||
500640.CIT292_10655 | (>) | ER | |||
500640.CIT292_08420 | + | (ER) | |||
500640.CIT292_08888 | + | ER | |||
500640.CIT292_09981 | + | (mitochondrial) | |||
500640.CIT292_10728 | + | ER | |||
500640.CIT292_10892 | + | ER | |||
500640.CIT292_06314 | + | (ER); ER | |||
500640.CIT292_06315 | + | ER | |||
500640.CIT292_10242 | (>) | ER | |||
500640.CIT292_07667 | + | mitochondrial; not used | |||
500640.CIT292_08632 | + | (plastid) | |||
500640.CIT292_07205 | (PF08125) (PF01232) | ||||
500640.CIT292_10155 | + | (>) | |||
500640.CIT292_07703 | + | (mitochondrial) | |||
500640.CIT292_07471 | + | (mitochondrial) | |||
500640.CIT292_10417 | (<) | (mitochondrial) | |||
500640.CIT292_05904 | (+) | ER | |||
500640.CIT292_08820 | + | (plastid) | |||
500640.CIT292_09581 | + | (PF13347) | |||
500640.CIT292_08615 | + | (plastid) | |||
500640.CIT292_08870 | (<) | (PF00465) | |||
500640.CIT292_08093 | (PF05683) (PF05681) | ||||
500640.CIT292_06272 | + | + | |||
500640.CIT292_07752 | + | (mitochondrial) | |||
500640.CIT292_06261 | (+) | (ER) | |||
500640.CIT292_10340 | (+) | ER | |||
500640.CIT292_10582 | (<) | + | |||
500640.CIT292_09660 | + | (plastid) | |||
500640.CIT292_08701 | (+) | (mitochondrial) | |||
500640.CIT292_06631 | + | + | |||
500640.CIT292_06634 | + | plastid | |||
500640.CIT292_06724 | + | plastid | |||
500640.CIT292_10107 | + | (mitochondrial) | |||
500640.CIT292_08484 | (+) | mitochondrial | |||
500640.CIT292_06841 | (+) | (mitochondrial) | |||
500640.CIT292_10329 | (+) | (ER) | |||
500640.CIT292_09689 | + | (mitochondrial); not used | |||
500640.CIT292_11201 | (+) | (mitochondrial) | |||
500640.CIT292_07974 | + | (PF00343) | |||
500640.CIT292_11023 | + | + | |||
500640.CIT292_07379 | + | (PF03797) | |||
500640.CIT292_07570 | (<) | ER; not used | |||
500640.CIT292_10317 | + | (PF03222) | |||
500640.CIT292_06766 | (PF03313) (PF03315) | ||||
500640.CIT292_06169 | + | (mitochondrial) | |||
500640.CIT292_10783 | + | (PF03222) | |||
500640.CIT292_10499 | (+) | mitochondrial | |||
500640.CIT292_07506 | (+) | (mitochondrial); (plastid) | |||
500640.CIT292_07170 | (PF08125) (PF01232) | ||||
500640.CIT292_08038 | + | + | |||
500640.CIT292_08961 | + | (plastid) | |||
500640.CIT292_06569 | (+) | (mitochondrial) | |||
500640.CIT292_07299 | + | (mitochondrial) | |||
500640.CIT292_11076 | (PF05683) (PF05681) | ||||
500640.CIT292_07610 | + | plastid | |||
500640.CIT292_07587 | (+) | mitochondrial | |||
500640.CIT292_09970 | + | (>) | |||
500640.CIT292_09794 | (+) | (mitochondrial) | |||
500640.CIT292_08380 | (+) | (mitochondrial) | |||
500640.CIT292_08836 | (PF13347) | (ER) | |||
500640.CIT292_09294 | (PF08125) (PF01232) | ||||
500640.CIT292_06057 | (PF10662) | (mitochondrial) | |||
500640.CIT292_11119 | (PF01116) | (mitochondrial) | |||
500640.CIT292_10448 | + | (plastid) | |||
500640.CIT292_09891 | (+) | (mitochondrial) | |||
500640.CIT292_10992 | + | (plastid) | |||
500640.CIT292_06321 | (PF00384) | (mitochondrial) | |||
500640.CIT292_06216 | + | (plastid) | |||
500640.CIT292_10535 | + | (mitochondrial) | |||
500640.CIT292_11125 | (<) | (PF00384) | |||
500640.CIT292_07251 | (PF05683) (PF05681) | ||||
500640.CIT292_08957 | (+) | ER | |||
500640.CIT292_09312 | + | (mitochondrial); not used | |||
500640.CIT292_10982 | + | (PF00345) | |||
500640.CIT292_11130 | (PF03918) | (mitochondrial) | |||
500640.CIT292_08029 | + | + | |||
500640.CIT292_06526 | (PF00465) | (mitochondrial) | |||
500640.CIT292_06011 | + | (mitochondrial) | |||
500640.CIT292_06656 | (PF03222) | (ER) | |||
500640.CIT292_07349 | (+) | (ER) | |||
500640.CIT292_10688 | + | (mitochondrial) | |||
500640.CIT292_08088 | (PF05034) (PF07476) | ||||
500640.CIT292_06513 | + | (PF00384) | |||
500640.CIT292_10891 | (+) | mitochondrial; (mitochondrial) | |||
500640.CIT292_07662 | + | ||||
500640.CIT292_08635 | (+) | (plastid) | |||
500640.CIT292_09696 | + | ||||
500640.CIT292_08980 | + | not used | |||
500640.CIT292_09212 | + | ||||
500640.CIT292_08857 | (PF00384) | ||||
500640.CIT292_08859 | + | ||||
500640.CIT292_09452 | + | ||||
500640.CIT292_09459 | (<) | ||||
500640.CIT292_10150 | (>) | ||||
500640.CIT292_07702 | + | ||||
500640.CIT292_06870 | (PF00465) | ||||
500640.CIT292_08678 | + | ||||
500640.CIT292_08540 | + | ||||
500640.CIT292_10370 | (+) | (PF13347) | |||
500640.CIT292_10377 | (+) | (PF00465) | |||
500640.CIT292_06079 | (>) | ||||
500640.CIT292_06676 | + | ||||
500640.CIT292_06678 | + | ||||
500640.CIT292_09975 | + | ||||
500640.CIT292_07075 | + | ||||
500640.CIT292_11301 | + | ||||
500640.CIT292_07679 | + | ||||
500640.CIT292_07674 | (PF03797) | ||||
500640.CIT292_07695 | + | ||||
500640.CIT292_08622 | + | ||||
500640.CIT292_08623 | + | ||||
500640.CIT292_08624 | + | ||||
500640.CIT292_08533 | (<) | ||||
500640.CIT292_07855 | (+) | (mitochondrial) | |||
500640.CIT292_09268 | (+) | mitochondrial; not used | |||
500640.CIT292_09862 | + | ||||
500640.CIT292_10410 | + | ||||
500640.CIT292_09714 | (PF00345) | ||||
500640.CIT292_10967 | + | ||||
500640.CIT292_06909 | + | ||||
500640.CIT292_06065 | (PF00465) | ||||
500640.CIT292_08646 | + | ||||
500640.CIT292_10643 | + | ||||
500640.CIT292_10827 | + | ||||
500640.CIT292_07920 | + | ||||
500640.CIT292_08611 | + | ||||
500640.CIT292_08504 | (<) | ||||
500640.CIT292_08271 | + | ||||
500640.CIT292_09673 | + | ||||
500640.CIT292_09275 | (+) | (plastid) | |||
500640.CIT292_09277 | + | ||||
500640.CIT292_09271 | + | ||||
500640.CIT292_08872 | + | ||||
500640.CIT292_09878 | + | ||||
500640.CIT292_08470 | + | ||||
500640.CIT292_09471 | (PF13347) | ||||
500640.CIT292_10175 | + | ||||
500640.CIT292_10174 | (PF00834) | ||||
500640.CIT292_09705 | + | ||||
500640.CIT292_10354 | + | ||||
500640.CIT292_10823 | + | ||||
500640.CIT292_06193 | + | not used | |||
500640.CIT292_07761 | + | ||||
500640.CIT292_08048 | + | ||||
500640.CIT292_08041 | + | ||||
500640.CIT292_08594 | + | ||||
500640.CIT292_09392 | + | ||||
500640.CIT292_06907 | + | not used | |||
500640.CIT292_09240 | (PF03222) | ||||
500640.CIT292_07896 | + | not used | |||
500640.CIT292_10293 | (>) | ||||
500640.CIT292_09731 | (+) | + | |||
500640.CIT292_09730 | + | ||||
500640.CIT292_10765 | + | ||||
500640.CIT292_10761 | (PF01116) | ||||
500640.CIT292_10762 | + | ||||
500640.CIT292_10349 | (<) | ||||
500640.CIT292_10832 | (PF00465) | ||||
500640.CIT292_10836 | (PF00465) | ||||
500640.CIT292_09829 | (+) | (mitochondrial); not used | |||
500640.CIT292_06886 | + | ||||
500640.CIT292_08432 | + | ||||
500640.CIT292_06884 | + | ||||
500640.CIT292_06739 | + | ||||
500640.CIT292_08320 | + | ||||
500640.CIT292_07424 | + | ||||
500640.CIT292_09389 | + | ||||
500640.CIT292_08253 | + | ||||
500640.CIT292_08670 | (PF00345) | ||||
500640.CIT292_11192 | + | ||||
500640.CIT292_11197 | + | ||||
500640.CIT292_09252 | (+) | (ER); not used | |||
500640.CIT292_09812 | + | ||||
500640.CIT292_09813 | + | ||||
500640.CIT292_09653 | (PF00465) | ||||
500640.CIT292_08922 | + | ||||
500640.CIT292_06852 | (PF00384) | ||||
500640.CIT292_09724 | (+) | (plastid) | |||
500640.CIT292_09035 | + | ||||
500640.CIT292_09030 | + | ||||
500640.CIT292_10024 | + | ||||
500640.CIT292_08450 | + | ||||
500640.CIT292_10334 | (PF00384) | ||||
500640.CIT292_10939 | (PF00384) | ||||
500640.CIT292_11060 | (PF00577) | ||||
500640.CIT292_06632 | (+) | (plastid) | |||
500640.CIT292_10070 | + | ||||
500640.CIT292_07434 | + | ||||
500640.CIT292_11034 | + | ||||
500640.CIT292_07891 | (+) | + | |||
500640.CIT292_09535 | + | ||||
500640.CIT292_09627 | (PF01116) | ||||
500640.CIT292_09646 | + | ||||
500640.CIT292_08930 | (PF13347) | ||||
500640.CIT292_08939 | (PF00465) | ||||
500640.CIT292_08600 | (>) | ||||
500640.CIT292_07585 | (+) | mitochondrial; not used | |||
500640.CIT292_10748 | (+) | (mitochondrial) | |||
500640.CIT292_10325 | + | not used | |||
500640.CIT292_10321 | + | ||||
500640.CIT292_10925 | + | ||||
500640.CIT292_06623 | (+) | (plastid) | |||
500640.CIT292_06711 | (+) | (plastid) | |||
500640.CIT292_10045 | + | ||||
500640.CIT292_10044 | + | ||||
500640.CIT292_10922 | (>) | ||||
500640.CIT292_09967 | + | ||||
500640.CIT292_07408 | + | ||||
500640.CIT292_08467 | + | ||||
500640.CIT292_08109 | (<) | ||||
500640.CIT292_06502 | + | ||||
500640.CIT292_08239 | (+) | (PF00465) | |||
500640.CIT292_08238 | + | ||||
500640.CIT292_07375 | + | ||||
500640.CIT292_07576 | + | ||||
500640.CIT292_08831 | + | ||||
500640.CIT292_08835 | (PF13347) | ||||
500640.CIT292_08345 | + | ||||
500640.CIT292_08900 | + | ||||
500640.CIT292_10007 | + | ||||
500640.CIT292_10035 | + | ||||
500640.CIT292_06362 | + | ||||
500640.CIT292_08487 | (>) | ||||
500640.CIT292_10191 | (>) | ||||
500640.CIT292_06164 | + | ||||
500640.CIT292_07214 | (PF00384) | ||||
500640.CIT292_07416 | (+) | (mitochondrial) | |||
500640.CIT292_08102 | + | ||||
500640.CIT292_10721 | + | ||||
500640.CIT292_07707 | + | ||||
500640.CIT292_07708 | + | ||||
500640.CIT292_07960 | + | ||||
500640.CIT292_08647 | + | ||||
500640.CIT292_08734 | (<) | ||||
500640.CIT292_09198 | + | ||||
500640.CIT292_06230 | + | ||||
500640.CIT292_08131 | (+) | (mitochondrial) | |||
500640.CIT292_09178 | + | ||||
500640.CIT292_07334 | + | ||||
500640.CIT292_06956 | (>) | ||||
500640.CIT292_10789 | (PF03313) | ||||
500640.CIT292_10786 | + | ||||
500640.CIT292_09772 | (PF00465) | ||||
500640.CIT292_09776 | + | ||||
500640.CIT292_10995 | + | ||||
500640.CIT292_10658 | + | ||||
500640.CIT292_07392 | + | ||||
500640.CIT292_10871 | (PF05683) | ||||
500640.CIT292_10872 | (+) | (PF05681) | |||
500640.CIT292_06260 | + | ||||
500640.CIT292_10305 | + | ||||
500640.CIT292_06370 | + | not used | |||
500640.CIT292_08229 | + | ||||
500640.CIT292_06777 | + | ||||
500640.CIT292_10833 | + | ||||
500640.CIT292_08424 | (>) | ||||
500640.CIT292_11004 | + | not used | |||
500640.CIT292_08848 | + | ||||
500640.CIT292_07179 | (+) | (PF00465) | |||
500640.CIT292_07174 | + | ||||
500640.CIT292_07287 | (+) | (mitochondrial) | |||
500640.CIT292_10220 | + | ||||
500640.CIT292_11008 | + | (<) | not used | ||
500640.CIT292_07911 | (PF00384) | ||||
500640.CIT292_07350 | + | ||||
500640.CIT292_07352 | + | ||||
500640.CIT292_07948 | + | ||||
500640.CIT292_08690 | + | ||||
500640.CIT292_08366 | + | ||||
500640.CIT292_08601 | (>) | ||||
500640.CIT292_08369 | (>) | not used | |||
500640.CIT292_08740 | (>) | ||||
500640.CIT292_09617 | + | ||||
500640.CIT292_06528 | (+) | (plastid) | |||
500640.CIT292_09185 | + | ||||
500640.CIT292_09166 | + | ||||
500640.CIT292_09500 | (PF00577) | ||||
500640.CIT292_06963 | (PF00384) | ||||
500640.CIT292_10141 | + | ||||
500640.CIT292_05992 | (PF07678) | ||||
500640.CIT292_09768 | (+) | (mitochondrial); not used | |||
500640.CIT292_09769 | + | ||||
500640.CIT292_06419 | + | ||||
500640.CIT292_07710 | + | ||||
500640.CIT292_10208 | (PF00343) | ||||
500640.CIT292_10202 | + | ||||
500640.CIT292_06809 | + | ||||
500640.CIT292_07652 | + | ||||
500640.CIT292_08858 | (PF00384) | ||||
500640.CIT292_06982 | (PF03797) | ||||
500640.CIT292_06980 | (PF03797) | ||||
500640.CIT292_10849 | (+) | (PF03797) | |||
500640.CIT292_06741 | + | ||||
500640.CIT292_11024 | + | ||||
500640.CIT292_07296 | (+) | plastid | |||
500640.CIT292_07973 | (PF00343) | ||||
500640.CIT292_11056 | + | ||||
500640.CIT292_09910 | (>) | ||||
500640.CIT292_07107 | (<) | ||||
500640.CIT292_08107 | (+) | (mitochondrial); not used | |||
500640.CIT292_07764 | + | ||||
500640.CIT292_07765 | + | ||||
500640.CIT292_08322 | + | ||||
500640.CIT292_08378 | + | ||||
500640.CIT292_09917 | + | ||||
500640.CIT292_09378 | + | ||||
500640.CIT292_08200 | + | ||||
500640.CIT292_09371 | (+) | (mitochondrial) | |||
500640.CIT292_08974 | (>) | ||||
500640.CIT292_08976 | + | ||||
500640.CIT292_09156 | (>) | ||||
500640.CIT292_09151 | + | ||||
500640.CIT292_06974 | + | ||||
500640.CIT292_10479 | (PF03797) | ||||
500640.CIT292_07524 | + | ||||
500640.CIT292_10696 | + | ||||
500640.CIT292_10217 | (PF00343) | ||||
500640.CIT292_06560 | (>) | ||||
500640.CIT292_06353 | + | ||||
500640.CIT292_09524 | + | ||||
500640.CIT292_06757 | (+) | (plastid) | |||
500640.CIT292_08337 | + | ||||
500640.CIT292_07110 | + | ||||
500640.CIT292_07119 | (PF00384) | ||||
500640.CIT292_07118 | (PF00384) | ||||
500640.CIT292_11100 | (+) | (plastid) | |||
500640.CIT292_07758 | + | ||||
500640.CIT292_07020 | + | not used | |||
500640.CIT292_08564 | (PF00834) | ||||
500640.CIT292_07337 | + | ||||
500640.CIT292_07335 | (<) | ||||
500640.CIT292_07805 | + | ||||
500640.CIT292_09364 | (PF03981) | ||||
500640.CIT292_11109 | + | ||||
500640.CIT292_08353 | + | ||||
500640.CIT292_11281 | + | ||||
500640.CIT292_09785 | + | ||||
500640.CIT292_06691 | (PF13347) | ||||
500640.CIT292_11030 | + | ||||
500640.CIT292_10991 | + | not used | |||
500640.CIT292_10990 | + | not used | |||
500640.CIT292_06325 | (<) | not used | |||
500640.CIT292_10536 | + | ||||
500640.CIT292_06217 | + | ||||
500640.CIT292_07733 | (+) | (ER) | |||
500640.CIT292_07319 | (<) | ||||
500640.CIT292_07731 | (+) | (<) | |||
500640.CIT292_07103 | (+) | (mitochondrial) | |||
500640.CIT292_07108 | (PF00384) | ||||
500640.CIT292_10336 | (+) | + | |||
500640.CIT292_08579 | (PF03981) | ||||
500640.CIT292_08573 | (+) | (plastid) | |||
500640.CIT292_07327 | (>) | ||||
500640.CIT292_07818 | + | not used | |||
500640.CIT292_11123 | + | not used | |||
500640.CIT292_06480 | + | ||||
500640.CIT292_08707 | + | ||||
500640.CIT292_07928 | (+) | (plastid) | |||
500640.CIT292_11053 | + | ||||
500640.CIT292_08956 | (>) | ||||
500640.CIT292_09223 | + | not used | |||
500640.CIT292_09557 | (+) | (plastid) | |||
500640.CIT292_09043 | (PF03738) | ||||
500640.CIT292_09044 | + | ||||
500640.CIT292_05924 | (>) | ||||
500640.CIT292_07929 | + | ||||
500640.CIT292_10451 | (PF01116) | ||||
500640.CIT292_10454 | + | ||||
500640.CIT292_10458 | (PF13347) | ||||
500640.CIT292_09310 | (+) | (plastid) | |||
500640.CIT292_10983 | (PF00577) | ||||
500640.CIT292_10528 | + | ||||
500640.CIT292_10520 | (>) | ||||
500640.CIT292_06206 | (PF00384) | ||||
500640.CIT292_10668 | + | ||||
500640.CIT292_08400 | + | ||||
500640.CIT292_08401 | + | ||||
500640.CIT292_07032 | + | ||||
500640.CIT292_08461 | + | not used | |||
500640.CIT292_07523 | + | ||||
500640.CIT292_11283 | (+) | + | |||
500640.CIT292_07791 | (PF00384) | ||||
500640.CIT292_08090 | (PF14330) | ||||
500640.CIT292_07489 | (PF01116) | ||||
500640.CIT292_07313 | + | ||||
500640.CIT292_11040 | + | ||||
500640.CIT292_08433 | + | ||||
500640.CIT292_08279 | + | ||||
500640.CIT292_06853 | (<) | ||||
500640.CIT292_08022 | + | ||||
500640.CIT292_10422 | (PF01501) | ||||
500640.CIT292_10421 | (PF01501) | ||||
500640.CIT292_10420 | (+) | (PF01501) | |||
500640.CIT292_10733 | (<) | ||||
500640.CIT292_06525 | (>) | ||||
500640.CIT292_08595 | + | ||||
500640.CIT292_06300 | (+) | (ER) | |||
500640.CIT292_06305 | + | ||||
500640.CIT292_10255 | + | ||||
500640.CIT292_07124 | + | not used | |||
500640.CIT292_06365 | + | ||||
500640.CIT292_08055 | + | ||||
500640.CIT292_10223 | + | not used | |||
500640.CIT292_08293 | (<) | ||||
500640.CIT292_07497 | + | ||||
500640.CIT292_07308 | + | ||||
500640.CIT292_11147 | (+) | (mitochondrial) | |||
500640.CIT292_08557 | (PF00834) | ||||
500640.CIT292_08683 | + | ||||
500640.CIT292_09332 | (+) | (mitochondrial) | |||
500640.CIT292_09337 | + | ||||
500640.CIT292_08422 | + | not used | |||
500640.CIT292_10623 | + | ||||
500640.CIT292_09114 | + | ||||
500640.CIT292_10514 | + | ||||
500640.CIT292_11171 | + | ||||
500640.CIT292_06794 | + | ||||
500640.CIT292_10940 | (PF03738) | ||||
500640.CIT292_10549 | (>) | ||||
500640.CIT292_10545 | (+) | ER | |||
500640.CIT292_10890 | (PF03738) | ||||
500640.CIT292_09884 | + | ||||
500640.CIT292_07149 | + | ||||
500640.CIT292_07069 | (+) | (ER) | |||
500640.CIT292_09905 | + | ||||
500640.CIT292_09409 | + | ||||
500640.CIT292_06203 | (+) | ||||
500640.CIT292_07664 | (+) | ||||
500640.CIT292_08525 | (+) | ||||
500640.CIT292_07204 | (+) | ||||
500640.CIT292_07203 | (+) | ||||
500640.CIT292_07201 | (+) | ||||
500640.CIT292_09695 | (+) | not used | |||
500640.CIT292_09429 | (+) | ||||
500640.CIT292_09215 | (+) | ||||
500640.CIT292_08856 | (+) | ||||
500640.CIT292_09078 | (+) | ||||
500640.CIT292_09075 | (+) | ||||
500640.CIT292_06876 | (+) | ||||
500640.CIT292_08629 | (+) | ||||
500640.CIT292_06814 | (+) | ||||
500640.CIT292_05913 | (+) | ||||
500640.CIT292_08273 | (+) | ||||
500640.CIT292_06257 | (+) | ||||
500640.CIT292_06078 | (+) | ||||
500640.CIT292_10470 | (+) | ||||
500640.CIT292_10471 | (+) | ||||
500640.CIT292_11154 | (+) | not used | |||
500640.CIT292_10476 | (+) | ||||
500640.CIT292_07688 | (+) | ||||
500640.CIT292_07517 | (+) | not used | |||
500640.CIT292_07478 | (+) | ||||
500640.CIT292_06400 | (+) | ||||
500640.CIT292_09456 | (+) | not used | |||
500640.CIT292_07693 | (+) | ||||
500640.CIT292_08621 | (+) | ||||
500640.CIT292_07022 | (+) | not used | |||
500640.CIT292_09663 | (+) | ||||
500640.CIT292_08447 | (+) | ||||
500640.CIT292_09266 | (+) | ||||
500640.CIT292_08997 | (+) | ||||
500640.CIT292_08994 | (+) | ||||
500640.CIT292_09460 | (+) | ||||
500640.CIT292_09464 | (+) | ||||
500640.CIT292_06582 | (+) | ||||
500640.CIT292_05908 | (+) | ||||
500640.CIT292_10960 | (+) | ||||
500640.CIT292_10964 | (+) | ||||
500640.CIT292_10568 | (+) | ||||
500640.CIT292_06064 | (+) | ||||
500640.CIT292_06112 | (+) | ||||
500640.CIT292_10553 | (+) | not used | |||
500640.CIT292_07048 | (+) | ||||
500640.CIT292_06296 | (+) | ||||
500640.CIT292_07449 | (+) | ||||
500640.CIT292_09582 | (+) | not used | |||
500640.CIT292_10737 | (+) | ||||
500640.CIT292_09854 | (+) | ||||
500640.CIT292_08503 | (+) | ||||
500640.CIT292_08507 | (+) | ||||
500640.CIT292_07228 | (+) | ||||
500640.CIT292_09877 | (+) | ||||
500640.CIT292_09010 | (+) | ||||
500640.CIT292_06271 | (+) | not used | |||
500640.CIT292_07096 | (+) | ||||
500640.CIT292_06295 | (+) | not used | |||
500640.CIT292_09839 | (+) | not used | |||
500640.CIT292_06298 | (+) | not used | |||
500640.CIT292_08975 | (+) | ||||
500640.CIT292_06727 | (+) | ||||
500640.CIT292_10493 | (+) | not used | |||
500640.CIT292_07187 | (+) | ||||
500640.CIT292_09242 | (+) | ||||
500640.CIT292_08861 | (+) | ||||
500640.CIT292_08864 | (+) | not used | |||
500640.CIT292_10297 | (+) | ||||
500640.CIT292_10290 | (+) | ||||
500640.CIT292_10299 | (+) | ||||
500640.CIT292_09022 | (+) | ||||
500640.CIT292_10760 | (+) | ||||
500640.CIT292_08559 | (+) | ||||
500640.CIT292_05967 | (+) | ||||
500640.CIT292_05963 | (+) | ||||
500640.CIT292_10901 | (+) | ||||
500640.CIT292_10903 | (+) | ||||
500640.CIT292_10613 | (+) | ||||
500640.CIT292_07871 | (+) | ||||
500640.CIT292_08036 | + | ||||
500640.CIT292_10570 | (+) | ||||
500640.CIT292_09624 | (+) | not used | |||
500640.CIT292_08324 | (+) | ||||
500640.CIT292_09232 | (+) | not used | |||
500640.CIT292_11251 | (+) | ||||
500640.CIT292_09233 | (+) | not used | |||
500640.CIT292_07089 | (+) | ||||
500640.CIT292_11199 | (+) | ||||
500640.CIT292_11193 | (+) | ||||
500640.CIT292_08815 | (+) | ||||
500640.CIT292_09657 | (+) | ||||
500640.CIT292_08490 | (+) | ||||
500640.CIT292_08496 | (+) | ||||
500640.CIT292_09037 | (+) | ||||
500640.CIT292_09034 | (+) | ||||
500640.CIT292_10025 | (+) | not used | |||
500640.CIT292_05954 | (+) | ||||
500640.CIT292_05956 | (+) | ||||
500640.CIT292_11159 | (+) | not used | |||
500640.CIT292_06931 | (+) | ||||
500640.CIT292_10583 | (+) | ||||
500640.CIT292_07437 | (+) | ||||
500640.CIT292_08064 | (+) | ||||
500640.CIT292_07726 | (+) | ||||
500640.CIT292_11036 | (+) | ||||
500640.CIT292_08242 | (+) | ||||
500640.CIT292_08392 | (+) | ||||
500640.CIT292_07898 | (+) | ||||
500640.CIT292_10105 | (+) | ||||
500640.CIT292_09645 | (+) | ||||
500640.CIT292_08482 | (+) | ||||
500640.CIT292_06844 | (+) | ||||
500640.CIT292_09756 | (+) | ||||
500640.CIT292_07245 | (+) | ||||
500640.CIT292_10749 | (+) | ||||
500640.CIT292_08608 | (+) | ||||
500640.CIT292_06932 | (+) | ||||
500640.CIT292_06441 | (+) | ||||
500640.CIT292_08028 | (+) | ||||
500640.CIT292_08413 | (+) | ||||
500640.CIT292_09143 | (+) | not used | |||
500640.CIT292_07409 | (+) | ||||
500640.CIT292_07159 | (+) | not used | |||
500640.CIT292_08565 | (+) | ||||
500640.CIT292_06784 | (+) | ||||
500640.CIT292_06503 | (+) | ||||
500640.CIT292_08723 | (+) | not used | |||
500640.CIT292_08230 | (+) | ||||
500640.CIT292_10004 | (+) | ||||
500640.CIT292_07770 | (+) | ||||
500640.CIT292_10791 | (+) | ||||
500640.CIT292_06435 | (+) | ||||
500640.CIT292_08316 | (+) | ||||
500640.CIT292_10481 | (+) | not used | |||
500640.CIT292_08317 | (+) | not used | |||
500640.CIT292_10867 | (+) | ||||
500640.CIT292_10864 | (+) | ||||
500640.CIT292_06543 | (+) | ||||
500640.CIT292_08628 | (+) | ||||
500640.CIT292_08587 | (+) | not used | |||
500640.CIT292_08937 | (+) | ||||
500640.CIT292_07120 | (+) | ||||
500640.CIT292_06697 | (+) | ||||
500640.CIT292_11234 | (+) | not used | |||
500640.CIT292_08005 | (+) | ||||
500640.CIT292_08008 | (+) | ||||
500640.CIT292_07360 | (+) | ||||
500640.CIT292_11304 | (+) | ||||
500640.CIT292_08645 | (+) | ||||
500640.CIT292_10123 | (+) | ||||
500640.CIT292_09510 | (+) | ||||
500640.CIT292_08737 | (+) | ||||
500640.CIT292_09199 | (+) | ||||
500640.CIT292_09191 | (+) | ||||
500640.CIT292_09991 | (+) | ||||
500640.CIT292_09175 | (+) | ||||
500640.CIT292_10788 | (+) | ||||
500640.CIT292_10781 | (+) | ||||
500640.CIT292_10307 | (+) | ||||
500640.CIT292_10225 | (+) | ||||
500640.CIT292_09619 | (+) | ||||
500640.CIT292_06395 | (+) | ||||
500640.CIT292_06372 | (+) | not used | |||
500640.CIT292_06373 | (+) | ||||
500640.CIT292_06375 | (+) | not used | |||
500640.CIT292_06376 | (+) | ||||
500640.CIT292_09580 | (+) | ||||
500640.CIT292_07942 | (+) | ||||
500640.CIT292_09988 | (+) | ||||
500640.CIT292_09989 | (+) | ||||
500640.CIT292_11224 | (+) | ||||
500640.CIT292_08032 | (+) | ||||
500640.CIT292_11009 | (+) | not used | |||
500640.CIT292_07351 | (+) | ||||
500640.CIT292_07594 | (+) | ||||
500640.CIT292_08693 | (+) | ||||
500640.CIT292_08698 | (+) | ||||
500640.CIT292_07829 | (+) | ||||
500640.CIT292_09615 | (+) | ||||
500640.CIT292_07789 | (+) | ||||
500640.CIT292_09189 | (+) | ||||
500640.CIT292_09163 | (+) | ||||
500640.CIT292_09164 | (+) | not used | |||
500640.CIT292_08086 | (+) | ||||
500640.CIT292_09508 | (+) | ||||
500640.CIT292_07714 | (+) | ||||
500640.CIT292_06805 | (+) | ||||
500640.CIT292_10201 | (+) | ||||
500640.CIT292_10626 | (+) | ||||
500640.CIT292_06989 | (+) | not used | |||
500640.CIT292_10672 | (+) | ||||
500640.CIT292_06049 | (+) | not used | |||
500640.CIT292_10469 | (+) | ||||
500640.CIT292_10316 | (+) | ||||
500640.CIT292_06322 | (+) | ||||
500640.CIT292_07763 | (+) | ||||
500640.CIT292_08128 | (+) | ||||
500640.CIT292_07904 | (+) | ||||
500640.CIT292_07618 | (+) | ||||
500640.CIT292_08112 | (+) | ||||
500640.CIT292_09138 | (+) | ||||
500640.CIT292_08680 | (+) | ||||
500640.CIT292_08681 | (+) | ||||
500640.CIT292_10072 | (+) | ||||
500640.CIT292_09154 | (+) | ||||
500640.CIT292_09403 | (+) | not used | |||
500640.CIT292_09575 | (+) | ||||
500640.CIT292_09087 | (+) | ||||
500640.CIT292_07566 | (+) | not used | |||
500640.CIT292_11157 | (+) | ||||
500640.CIT292_06972 | (+) | ||||
500640.CIT292_10697 | (+) | ||||
500640.CIT292_10210 | (+) | not used | |||
500640.CIT292_06572 | (+) | ||||
500640.CIT292_08347 | (+) | ||||
500640.CIT292_06578 | (+) | ||||
500640.CIT292_08210 | (+) | ||||
500640.CIT292_06563 | (+) | ||||
500640.CIT292_09837 | (+) | not used | |||
500640.CIT292_06199 | (+) | not used | |||
500640.CIT292_06586 | (+) | ||||
500640.CIT292_08219 | (+) | ||||
500640.CIT292_08138 | (+) | ||||
500640.CIT292_07420 | (+) | ||||
500640.CIT292_07937 | (+) | ||||
500640.CIT292_10587 | (+) | ||||
500640.CIT292_11031 | (+) | ||||
500640.CIT292_06690 | (+) | not used | |||
500640.CIT292_10997 | (+) | ||||
500640.CIT292_07739 | (+) | ||||
500640.CIT292_10530 | (+) | ||||
500640.CIT292_07736 | (+) | ||||
500640.CIT292_07318 | (+) | not used | |||
500640.CIT292_07874 | (+) | ||||
500640.CIT292_08176 | (+) | ||||
500640.CIT292_09292 | (+) | ||||
500640.CIT292_06948 | (+) | ||||
500640.CIT292_06652 | (+) | not used | |||
500640.CIT292_10841 | (+) | ||||
500640.CIT292_08576 | (+) | not used | |||
500640.CIT292_08256 | (+) | ||||
500640.CIT292_07956 | (+) | ||||
500640.CIT292_06565 | (+) | ||||
500640.CIT292_07926 | (+) | ||||
500640.CIT292_06431 | (+) | ||||
500640.CIT292_11213 | (+) | ||||
500640.CIT292_06422 | (+) | ||||
500640.CIT292_06207 | (+) | ||||
500640.CIT292_06224 | (+) | ||||
500640.CIT292_09651 | (+) | ||||
500640.CIT292_07336 | (+) | ||||
500640.CIT292_08099 | (+) | ||||
500640.CIT292_07310 | (+) | ||||
500640.CIT292_09943 | (+) | ||||
500640.CIT292_08436 | (+) | ||||
500640.CIT292_10291 | (+) | ||||
500640.CIT292_06288 | (+) | ||||
500640.CIT292_10734 | (+) | ||||
500640.CIT292_10951 | (+) | ||||
500640.CIT292_06239 | (+) | ||||
500640.CIT292_10880 | (+) | ||||
500640.CIT292_10756 | (+) | ||||
500640.CIT292_09852 | (+) | ||||
500640.CIT292_06162 | (+) | ||||
500640.CIT292_09853 | (+) | ||||
500640.CIT292_07275 | (+) | ||||
500640.CIT292_10981 | (+) | not used | |||
500640.CIT292_09330 | (+) | ||||
500640.CIT292_10403 | (+) | ||||
500640.CIT292_07832 | (+) | ||||
500640.CIT292_10430 | (+) | ||||
500640.CIT292_06828 | (+) | ||||
500640.CIT292_06829 | (+) | ||||
500640.CIT292_05923 | (+) | ||||
500640.CIT292_06004 | (+) | not used | |||
500640.CIT292_09608 | (+) | ||||
500640.CIT292_07065 | (+) | ||||
500640.CIT292_08309 | (+) | ||||
500640.CIT292_08750 | (+) | ||||
500640.CIT292_10938 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.5 (15/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 2.625 (21/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.5 (15/10 KEGG proteins)
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 2.625 (21/8 KEGG proteins)