Effective results for Enterobacter cancerogenus ATCC 35316 (eggnog40)

Summary

Number of putative secreted proteins: 644
- Predicted by EffectiveT3: 160 (high confidence), 274 (low confidence)
- Predicted by EffectiveCCBD: 29 within, 27 before, 41 behind expected region 25..70aa
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 61 proteins (0 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
500639.ENTCAN_07454		(>)	+		ER
500639.ENTCAN_06190			+		ER
500639.ENTCAN_07801		+			(mitochondrial)
500639.ENTCAN_08269	+				(ER)
500639.ENTCAN_09403		+			mitochondrial
500639.ENTCAN_05316		(<)			ER
500639.ENTCAN_05226				(PF00577)	(ER)
500639.ENTCAN_05225				(PF00345)	ER
500639.ENTCAN_05795		(>)			ER
500639.ENTCAN_08240		(<)			(ER)
500639.ENTCAN_06214			+		(mitochondrial)
500639.ENTCAN_07345		(>)			ER
500639.ENTCAN_08677		(>)			ER
500639.ENTCAN_06537		(>)			ER
500639.ENTCAN_08083				(PF00345)	ER
500639.ENTCAN_08084				(PF00577)	ER; (ER)
500639.ENTCAN_09424			+		ER
500639.ENTCAN_05153		(<)			ER
500639.ENTCAN_05931		+			ER
500639.ENTCAN_08318	+				(ER)
500639.ENTCAN_07766			+		mitochondrial; (mitochondrial)
500639.ENTCAN_05923		(>)			(mitochondrial)
500639.ENTCAN_06899	+				(mitochondrial)
500639.ENTCAN_05223			+		ER
500639.ENTCAN_06312		+			ER
500639.ENTCAN_06955			+		(ER); ER
500639.ENTCAN_06174		+			(mitochondrial)
500639.ENTCAN_07576				(PF01228)	(mitochondrial)
500639.ENTCAN_07754			+		ER
500639.ENTCAN_07200				(PF07678)	ER
500639.ENTCAN_09594			+		ER
500639.ENTCAN_05049				(PF00577)	ER
500639.ENTCAN_05912			+		ER
500639.ENTCAN_08296		(<)			(ER)
500639.ENTCAN_07566			+		ER
500639.ENTCAN_07363		(>)			ER
500639.ENTCAN_08984		(>)			ER
500639.ENTCAN_08987			+		ER
500639.ENTCAN_08169				(PF00345)	ER
500639.ENTCAN_08168				(PF00577)	ER
500639.ENTCAN_05906	+				mitochondrial
500639.ENTCAN_06603				(PF00577)	ER; (ER)
500639.ENTCAN_06604				(PF00345)	ER
500639.ENTCAN_07228			+		(ER)
500639.ENTCAN_08813		(>)			ER
500639.ENTCAN_05065				(PF00345)	mitochondrial
500639.ENTCAN_05066				(PF00577)	ER
500639.ENTCAN_09026				(PF00577)	ER
500639.ENTCAN_06747	+				ER; (ER)
500639.ENTCAN_05255			+		(mitochondrial)
500639.ENTCAN_07722		(>)			ER
500639.ENTCAN_07431			+		ER
500639.ENTCAN_08967				(PF00345)	ER
500639.ENTCAN_05814				(PF00577)	ER; (ER)
500639.ENTCAN_09039				(PF00577)	ER
500639.ENTCAN_05494			+		(mitochondrial)
500639.ENTCAN_06359				(PF00345)	ER
500639.ENTCAN_08772		+			ER
500639.ENTCAN_09040				(PF00345)	ER
500639.ENTCAN_05621		(>)			mitochondrial
500639.ENTCAN_06601			+		ER
500639.ENTCAN_07523				(PF00345)	ER
500639.ENTCAN_08231			+		mitochondrial
500639.ENTCAN_09720			+		ER
500639.ENTCAN_05706			+		ER
500639.ENTCAN_09614			+		ER
500639.ENTCAN_05634	+				(mitochondrial); (plastid)
500639.ENTCAN_05235		(<)			ER
500639.ENTCAN_06428			+		ER
500639.ENTCAN_09537			+		(mitochondrial)
500639.ENTCAN_09262		(>)			ER
500639.ENTCAN_09191			+		ER
500639.ENTCAN_08289			+		ER
500639.ENTCAN_07104		+			ER
500639.ENTCAN_05721			+		ER
500639.ENTCAN_09025			+		ER
500639.ENTCAN_07421		+			ER
500639.ENTCAN_07131		+			ER
500639.ENTCAN_08445		(>)			ER
500639.ENTCAN_07821				(PF00345)	ER
500639.ENTCAN_07820				(PF00577)	mitochondrial
500639.ENTCAN_05104		(<)			mitochondrial
500639.ENTCAN_06275			+		ER
500639.ENTCAN_08902		(<)			(ER)
500639.ENTCAN_08907				(PF00577)	ER; (ER)
500639.ENTCAN_08906				(PF00345)	ER
500639.ENTCAN_06055				(PF10908)	(mitochondrial)
500639.ENTCAN_07906		(>)			(mitochondrial); mitochondrial
500639.ENTCAN_07633		(>)			(mitochondrial)
500639.ENTCAN_08472			+		ER
500639.ENTCAN_07958				(PF09811)	mitochondrial
500639.ENTCAN_09099				(PF00345)	ER
500639.ENTCAN_09094				(PF00345)	ER
500639.ENTCAN_07935	(+)				(mitochondrial); plastid
500639.ENTCAN_07932	+				plastid
500639.ENTCAN_05776	+				plastid
500639.ENTCAN_09136		(<)			(ER)
500639.ENTCAN_08534	+				(ER)
500639.ENTCAN_07336		(>)			(mitochondrial)
500639.ENTCAN_07342	(+)				(ER); (mitochondrial)
500639.ENTCAN_08073		(<)	+
500639.ENTCAN_08413	+				plastid
500639.ENTCAN_09128		(>)			(mitochondrial)
500639.ENTCAN_05331		(<)			(mitochondrial); not used
500639.ENTCAN_07545	(+)	+			(plastid)
500639.ENTCAN_07789	(+)				(mitochondrial)
500639.ENTCAN_07944	+	+
500639.ENTCAN_09438	+		+
500639.ENTCAN_05857	+				(mitochondrial)
500639.ENTCAN_09100	(+)				ER
500639.ENTCAN_06081	(+)				mitochondrial
500639.ENTCAN_06796		+			(mitochondrial); not used
500639.ENTCAN_05124		+			ER; not used
500639.ENTCAN_08184			+		(ER)
500639.ENTCAN_05585		(<)			(ER); not used
500639.ENTCAN_06777	+	(<)
500639.ENTCAN_08579	(+)				mitochondrial
500639.ENTCAN_08364	+	(>)
500639.ENTCAN_07532	(+)				(ER); (plastid)
500639.ENTCAN_08308	(+)				ER
500639.ENTCAN_08968	(+)				ER
500639.ENTCAN_08966				(PF00577)	(mitochondrial)
500639.ENTCAN_09033	(+)				(mitochondrial)
500639.ENTCAN_06281	+				(plastid)
500639.ENTCAN_06352	(+)				(ER)
500639.ENTCAN_07524	+			(PF00577)
500639.ENTCAN_06658	+	+
500639.ENTCAN_06656	+				(plastid)
500639.ENTCAN_09547				(PF13347)	(ER)
500639.ENTCAN_08193	+			(PF00345)
500639.ENTCAN_07064	+				(mitochondrial)
500639.ENTCAN_07115	+				(mitochondrial)
500639.ENTCAN_08226	(+)				mitochondrial; (mitochondrial)
500639.ENTCAN_05352				(PF01228)	(mitochondrial)
500639.ENTCAN_08315	+				(ER)
500639.ENTCAN_05969	(+)				(mitochondrial)
500639.ENTCAN_08039	+				(plastid)
500639.ENTCAN_06920	+				mitochondrial; not used
500639.ENTCAN_07994		+			(mitochondrial)
500639.ENTCAN_06276	(+)				ER; (ER)
500639.ENTCAN_05720	(+)				(mitochondrial)
500639.ENTCAN_08873	+				mitochondrial; not used
500639.ENTCAN_08474	(+)				(mitochondrial); (plastid)
500639.ENTCAN_09251				(PF00345)	(ER)
500639.ENTCAN_08438			+		mitochondrial
500639.ENTCAN_08911	+
500639.ENTCAN_06513		+
500639.ENTCAN_07335		(>)
500639.ENTCAN_06682		(<)
500639.ENTCAN_06993			+
500639.ENTCAN_07937	+
500639.ENTCAN_05177	+
500639.ENTCAN_08312	(+)	+
500639.ENTCAN_09316		(>)
500639.ENTCAN_05310	+
500639.ENTCAN_09137	+
500639.ENTCAN_09135				(PF01228)
500639.ENTCAN_05550				(PF01977)
500639.ENTCAN_05229		+
500639.ENTCAN_08336			+		not used
500639.ENTCAN_08532	+
500639.ENTCAN_07487			+
500639.ENTCAN_07489	+
500639.ENTCAN_09724				(PF01977)
500639.ENTCAN_06140				(PF01977)
500639.ENTCAN_07922	+
500639.ENTCAN_08091		(>)
500639.ENTCAN_05168	(+)				plastid
500639.ENTCAN_08327	+
500639.ENTCAN_09302	+				not used
500639.ENTCAN_05309				(PF13347)
500639.ENTCAN_09129	(+)				ER; not used
500639.ENTCAN_05099	+
500639.ENTCAN_05092				(PF13347)
500639.ENTCAN_05546		(<)
500639.ENTCAN_05547	+				not used
500639.ENTCAN_05233	+
500639.ENTCAN_06711			+
500639.ENTCAN_06810			+
500639.ENTCAN_05438	+
500639.ENTCAN_06020	(+)				(mitochondrial)
500639.ENTCAN_06447		(<)			not used
500639.ENTCAN_06445		(<)
500639.ENTCAN_07313	+
500639.ENTCAN_07559	+
500639.ENTCAN_07775	+
500639.ENTCAN_06410		+
500639.ENTCAN_08402		(>)
500639.ENTCAN_09423	+
500639.ENTCAN_08536	+
500639.ENTCAN_09689			+
500639.ENTCAN_09222	+
500639.ENTCAN_06230	+
500639.ENTCAN_06610			+
500639.ENTCAN_06495	(+)				(plastid)
500639.ENTCAN_06164	+				not used
500639.ENTCAN_07540	+				not used
500639.ENTCAN_07786	+
500639.ENTCAN_07783	+
500639.ENTCAN_07945	(+)				(plastid)
500639.ENTCAN_07948	+
500639.ENTCAN_08651	(+)	(>)
500639.ENTCAN_07161	(+)				(plastid)
500639.ENTCAN_09432	+
500639.ENTCAN_05327	+
500639.ENTCAN_06228	(+)				(mitochondrial)
500639.ENTCAN_06226	+
500639.ENTCAN_07213		(>)
500639.ENTCAN_06793	+
500639.ENTCAN_06932	+
500639.ENTCAN_06318	+
500639.ENTCAN_06951	+
500639.ENTCAN_09510	+
500639.ENTCAN_06171	(+)				(mitochondrial); not used
500639.ENTCAN_06005	(+)				(mitochondrial)
500639.ENTCAN_06001	+
500639.ENTCAN_07575	+
500639.ENTCAN_05341	(+)				(ER)
500639.ENTCAN_09591			+
500639.ENTCAN_09351	+
500639.ENTCAN_05042		+
500639.ENTCAN_05596	+
500639.ENTCAN_08292			+
500639.ENTCAN_05662			+
500639.ENTCAN_05667	+
500639.ENTCAN_08615			+
500639.ENTCAN_09507	+
500639.ENTCAN_08614	+
500639.ENTCAN_06963			+
500639.ENTCAN_06106	+
500639.ENTCAN_07564	+				not used
500639.ENTCAN_06589				(PF13347)
500639.ENTCAN_06617	+
500639.ENTCAN_05901	(+)	(<)
500639.ENTCAN_08635	(+)				(mitochondrial)
500639.ENTCAN_07942	+
500639.ENTCAN_08742			+
500639.ENTCAN_07182	(+)			(PF16485)
500639.ENTCAN_05129	+
500639.ENTCAN_09584	+
500639.ENTCAN_08290			+
500639.ENTCAN_05050	(+)			(PF00345)
500639.ENTCAN_05698	(+)			(PF00345)
500639.ENTCAN_05697				(PF00577)
500639.ENTCAN_05695	(+)				(mitochondrial); not used
500639.ENTCAN_05271	+
500639.ENTCAN_05473				(PF01228)
500639.ENTCAN_05471	+
500639.ENTCAN_06808		+
500639.ENTCAN_06576	+
500639.ENTCAN_06593		(>)
500639.ENTCAN_07429	+
500639.ENTCAN_08624	+
500639.ENTCAN_08623	+
500639.ENTCAN_08999		(>)
500639.ENTCAN_07646	+				not used
500639.ENTCAN_08197	+
500639.ENTCAN_08192				(PF00577)
500639.ENTCAN_08171			+
500639.ENTCAN_09579		(<)
500639.ENTCAN_09577				(PF10908)
500639.ENTCAN_08280	+
500639.ENTCAN_08285				(PF13347)
500639.ENTCAN_09156	+
500639.ENTCAN_05484		+
500639.ENTCAN_06142	+
500639.ENTCAN_05641			+
500639.ENTCAN_09246	+
500639.ENTCAN_07836	(+)				(mitochondrial)
500639.ENTCAN_07837		+
500639.ENTCAN_06824		+
500639.ENTCAN_07504	+
500639.ENTCAN_07500	+				not used
500639.ENTCAN_06125	(+)				(ER)
500639.ENTCAN_08618	+
500639.ENTCAN_08976	+
500639.ENTCAN_08963	+
500639.ENTCAN_08612	+
500639.ENTCAN_08761	+
500639.ENTCAN_08147	+
500639.ENTCAN_09744			+		not used
500639.ENTCAN_05103	+
500639.ENTCAN_08545			+
500639.ENTCAN_05812	+				not used
500639.ENTCAN_05813				(PF00345)
500639.ENTCAN_08956			+
500639.ENTCAN_05251	+
500639.ENTCAN_09147			+
500639.ENTCAN_09148	+				not used
500639.ENTCAN_06802	+
500639.ENTCAN_05655	+				not used
500639.ENTCAN_08343	(+)				(mitochondrial)
500639.ENTCAN_07735	+
500639.ENTCAN_06351				(PF06884)
500639.ENTCAN_06915	(+)				(mitochondrial); not used
500639.ENTCAN_06912	+
500639.ENTCAN_07539	+
500639.ENTCAN_07530	+
500639.ENTCAN_07084	+
500639.ENTCAN_06621	+
500639.ENTCAN_06133	+
500639.ENTCAN_07400		(>)
500639.ENTCAN_07712	+
500639.ENTCAN_07714	+
500639.ENTCAN_06686	+
500639.ENTCAN_07248		(>)
500639.ENTCAN_08154	+
500639.ENTCAN_09557	(+)				(mitochondrial)
500639.ENTCAN_08557			+
500639.ENTCAN_08555	(+)	+
500639.ENTCAN_09739			+
500639.ENTCAN_05719				(PF13347)
500639.ENTCAN_09045	+
500639.ENTCAN_05829	+
500639.ENTCAN_09161	+
500639.ENTCAN_05629	+
500639.ENTCAN_05627	+
500639.ENTCAN_05623	+
500639.ENTCAN_05334		(<)			not used
500639.ENTCAN_05337		(>)
500639.ENTCAN_09236		(>)
500639.ENTCAN_06659	+
500639.ENTCAN_07055		+
500639.ENTCAN_07898		(<)
500639.ENTCAN_07257				(PF01228)
500639.ENTCAN_07181	(+)				(mitochondrial)
500639.ENTCAN_08991			+
500639.ENTCAN_08124		(>)
500639.ENTCAN_08019	+
500639.ENTCAN_05446	+
500639.ENTCAN_08010	+
500639.ENTCAN_09546				(PF13347)
500639.ENTCAN_09728	+				not used
500639.ENTCAN_05709	+				not used
500639.ENTCAN_05820		(<)
500639.ENTCAN_09612			+
500639.ENTCAN_09711	(+)	(>)
500639.ENTCAN_05630	+
500639.ENTCAN_08836		(>)
500639.ENTCAN_08953	+
500639.ENTCAN_08954	+
500639.ENTCAN_07602	+
500639.ENTCAN_08715				(PF01977)
500639.ENTCAN_08130	+
500639.ENTCAN_09535	+
500639.ENTCAN_05737			+
500639.ENTCAN_05288		(>)
500639.ENTCAN_09195	+
500639.ENTCAN_05356			+
500639.ENTCAN_06645			+
500639.ENTCAN_06559			+		not used
500639.ENTCAN_05515			+
500639.ENTCAN_07609	+
500639.ENTCAN_06418	+				not used
500639.ENTCAN_06706		(>)
500639.ENTCAN_08820	(+)		+
500639.ENTCAN_07070	(+)				(ER)
500639.ENTCAN_07479	+
500639.ENTCAN_07616	(+)				(plastid)
500639.ENTCAN_06675			+
500639.ENTCAN_06679	+
500639.ENTCAN_08728			+
500639.ENTCAN_09482	+
500639.ENTCAN_08031		(>)
500639.ENTCAN_08583	+
500639.ENTCAN_08217	+
500639.ENTCAN_08211				(PF13347)
500639.ENTCAN_09454	(+)	(<)
500639.ENTCAN_09293	+
500639.ENTCAN_08723	+
500639.ENTCAN_09186		(<)
500639.ENTCAN_05346				(PF13347)
500639.ENTCAN_05292	(+)				plastid
500639.ENTCAN_08300	+
500639.ENTCAN_09071	+
500639.ENTCAN_09259	+
500639.ENTCAN_06391		+
500639.ENTCAN_06386			+
500639.ENTCAN_08939		+
500639.ENTCAN_06889	+
500639.ENTCAN_06883	(+)				(mitochondrial)
500639.ENTCAN_07447	+
500639.ENTCAN_06720			+
500639.ENTCAN_06668	+
500639.ENTCAN_08730	(+)				(mitochondrial); not used
500639.ENTCAN_08731	+
500639.ENTCAN_07915	(+)		+
500639.ENTCAN_07133	+
500639.ENTCAN_09166	+
500639.ENTCAN_09518	+
500639.ENTCAN_08024		(>)
500639.ENTCAN_09511	+
500639.ENTCAN_07527		(>)
500639.ENTCAN_08202	+
500639.ENTCAN_09466				(PF13347)
500639.ENTCAN_05827	+
500639.ENTCAN_05991	(+)				(plastid)
500639.ENTCAN_05974	+
500639.ENTCAN_08974				(PF11397)
500639.ENTCAN_05376	+
500639.ENTCAN_05371	+
500639.ENTCAN_05106	(+)				(plastid)
500639.ENTCAN_06968	(+)				(ER)
500639.ENTCAN_07594			+
500639.ENTCAN_07591	+
500639.ENTCAN_08840		(<)
500639.ENTCAN_08901			+
500639.ENTCAN_06051	+
500639.ENTCAN_06502		(<)
500639.ENTCAN_06500			+
500639.ENTCAN_07419		+
500639.ENTCAN_06185		(<)
500639.ENTCAN_06985			+
500639.ENTCAN_07634		(>)
500639.ENTCAN_07631	+
500639.ENTCAN_07951	+
500639.ENTCAN_05986			+
500639.ENTCAN_07929	(+)		+
500639.ENTCAN_09250				(PF00577)
500639.ENTCAN_09656		(>)
500639.ENTCAN_09651		(<)
500639.ENTCAN_07258	+
500639.ENTCAN_09090	+
500639.ENTCAN_09095				(PF00577)
500639.ENTCAN_09002			+
500639.ENTCAN_06868	(+)
500639.ENTCAN_06860	(+)
500639.ENTCAN_08910	(+)
500639.ENTCAN_06464	(+)
500639.ENTCAN_07338	(+)
500639.ENTCAN_07337	(+)
500639.ENTCAN_07027	(+)
500639.ENTCAN_06999	(+)
500639.ENTCAN_07938	(+)
500639.ENTCAN_07933	(+)
500639.ENTCAN_08042	(+)
500639.ENTCAN_08261	(+)
500639.ENTCAN_08262	(+)
500639.ENTCAN_05881	(+)
500639.ENTCAN_05312	(+)
500639.ENTCAN_09133	(+)
500639.ENTCAN_09131	(+)
500639.ENTCAN_05083	(+)				not used
500639.ENTCAN_05792	(+)
500639.ENTCAN_06858	(+)				not used
500639.ENTCAN_06032	(+)
500639.ENTCAN_06329	(+)
500639.ENTCAN_06455	(+)
500639.ENTCAN_07435	(+)
500639.ENTCAN_08072	(+)
500639.ENTCAN_08076	(+)				not used
500639.ENTCAN_07815	(+)
500639.ENTCAN_08092	(+)
500639.ENTCAN_08090	(+)
500639.ENTCAN_09415	(+)
500639.ENTCAN_09417	(+)
500639.ENTCAN_05162	(+)
500639.ENTCAN_05769	(+)
500639.ENTCAN_05306	(+)
500639.ENTCAN_05839	(+)
500639.ENTCAN_05542	(+)
500639.ENTCAN_05784	(+)
500639.ENTCAN_05785	(+)
500639.ENTCAN_06815	(+)
500639.ENTCAN_05432	(+)
500639.ENTCAN_06201	(+)
500639.ENTCAN_06364	(+)
500639.ENTCAN_06150	(+)
500639.ENTCAN_07773	(+)
500639.ENTCAN_09492	(+)
500639.ENTCAN_08068	(+)
500639.ENTCAN_07175	(+)				not used
500639.ENTCAN_08246	(+)
500639.ENTCAN_09206	(+)
500639.ENTCAN_05444	(+)				not used
500639.ENTCAN_07959	(+)
500639.ENTCAN_05989	(+)
500639.ENTCAN_06948	(+)
500639.ENTCAN_06941	(+)
500639.ENTCAN_06167	(+)
500639.ENTCAN_07788	(+)
500639.ENTCAN_09617	(+)
500639.ENTCAN_06424	(+)
500639.ENTCAN_08507	(+)				not used
500639.ENTCAN_08503	(+)				not used
500639.ENTCAN_08502	(+)
500639.ENTCAN_08733	(+)
500639.ENTCAN_09327	(+)
500639.ENTCAN_06188	(+)
500639.ENTCAN_05854	(+)
500639.ENTCAN_09216	(+)
500639.ENTCAN_05215	(+)
500639.ENTCAN_08972	(+)
500639.ENTCAN_06794	(+)
500639.ENTCAN_06314	(+)
500639.ENTCAN_07579	(+)
500639.ENTCAN_08165	(+)				not used
500639.ENTCAN_05138	+
500639.ENTCAN_08510	(+)
500639.ENTCAN_08517	(+)
500639.ENTCAN_08116	(+)
500639.ENTCAN_05046	(+)
500639.ENTCAN_06646	(+)
500639.ENTCAN_07827	(+)
500639.ENTCAN_06542	(+)
500639.ENTCAN_07014	(+)
500639.ENTCAN_06762	(+)
500639.ENTCAN_05971	(+)
500639.ENTCAN_06105	(+)
500639.ENTCAN_07568	(+)
500639.ENTCAN_08658	(+)
500639.ENTCAN_09348	(+)
500639.ENTCAN_05057	(+)
500639.ENTCAN_09014	(+)
500639.ENTCAN_05586	(+)
500639.ENTCAN_05479	(+)
500639.ENTCAN_06771	(+)
500639.ENTCAN_06976	(+)				not used
500639.ENTCAN_06113	(+)
500639.ENTCAN_07512	(+)
500639.ENTCAN_06599	(+)
500639.ENTCAN_07428	(+)
500639.ENTCAN_08437	(+)
500639.ENTCAN_08758	(+)
500639.ENTCAN_08756	(+)
500639.ENTCAN_08576	(+)
500639.ENTCAN_08577	(+)
500639.ENTCAN_09392	(+)
500639.ENTCAN_09713	(+)
500639.ENTCAN_09153	(+)
500639.ENTCAN_05643	(+)
500639.ENTCAN_05648	(+)
500639.ENTCAN_09268	(+)
500639.ENTCAN_08982	(+)
500639.ENTCAN_07494	(+)
500639.ENTCAN_08029	(+)
500639.ENTCAN_06741	(+)
500639.ENTCAN_06743	(+)
500639.ENTCAN_06341	(+)
500639.ENTCAN_06901	(+)
500639.ENTCAN_08607	(+)
500639.ENTCAN_08619	(+)				not used
500639.ENTCAN_07238	(+)				not used
500639.ENTCAN_05685	(+)
500639.ENTCAN_09746	(+)				not used
500639.ENTCAN_09562	(+)
500639.ENTCAN_09366	(+)
500639.ENTCAN_09149	(+)
500639.ENTCAN_05600	(+)
500639.ENTCAN_06280	(+)
500639.ENTCAN_06629	(+)
500639.ENTCAN_07393	(+)
500639.ENTCAN_08770	(+)
500639.ENTCAN_08151	(+)
500639.ENTCAN_07866	(+)
500639.ENTCAN_09736	(+)
500639.ENTCAN_05710	(+)
500639.ENTCAN_05391	(+)
500639.ENTCAN_06183	(+)
500639.ENTCAN_07738	(+)
500639.ENTCAN_09235	+
500639.ENTCAN_08808	(+)
500639.ENTCAN_06660	(+)
500639.ENTCAN_06655	(+)
500639.ENTCAN_08942	(+)
500639.ENTCAN_08491	(+)				not used
500639.ENTCAN_07381	(+)
500639.ENTCAN_08997	(+)
500639.ENTCAN_08233	(+)
500639.ENTCAN_08236	(+)
500639.ENTCAN_06330	+				not used
500639.ENTCAN_07879	(+)
500639.ENTCAN_05837	(+)
500639.ENTCAN_06331	(+)				not used
500639.ENTCAN_05528	(+)				not used
500639.ENTCAN_06737	(+)
500639.ENTCAN_07462	(+)
500639.ENTCAN_08486	(+)
500639.ENTCAN_07266	(+)
500639.ENTCAN_08713	(+)
500639.ENTCAN_08138	(+)
500639.ENTCAN_08131	(+)
500639.ENTCAN_06482	(+)
500639.ENTCAN_08227	(+)
500639.ENTCAN_06485	(+)
500639.ENTCAN_05738	(+)
500639.ENTCAN_05731	(+)
500639.ENTCAN_05286	+
500639.ENTCAN_06009	(+)
500639.ENTCAN_09066	(+)
500639.ENTCAN_06708	(+)
500639.ENTCAN_06071	(+)
500639.ENTCAN_06074	(+)
500639.ENTCAN_07978	(+)
500639.ENTCAN_09115	(+)
500639.ENTCAN_07972	(+)
500639.ENTCAN_06672	(+)
500639.ENTCAN_08587	(+)
500639.ENTCAN_08214	(+)				not used
500639.ENTCAN_08213	(+)				not used
500639.ENTCAN_08643	(+)
500639.ENTCAN_05243	(+)
500639.ENTCAN_05615	(+)
500639.ENTCAN_05348	(+)
500639.ENTCAN_09622	(+)
500639.ENTCAN_06717	(+)				not used
500639.ENTCAN_08855	(+)
500639.ENTCAN_08851	(+)
500639.ENTCAN_08931	(+)
500639.ENTCAN_06093	(+)
500639.ENTCAN_06724	(+)
500639.ENTCAN_06395	(+)
500639.ENTCAN_08739	(+)
500639.ENTCAN_08732	(+)
500639.ENTCAN_07627	(+)
500639.ENTCAN_07628	(+)
500639.ENTCAN_08027	(+)
500639.ENTCAN_08206	(+)
500639.ENTCAN_08207	(+)
500639.ENTCAN_08112	(+)
500639.ENTCAN_05998	(+)
500639.ENTCAN_05193	(+)
500639.ENTCAN_07499	(+)				not used
500639.ENTCAN_05401	(+)
500639.ENTCAN_06271	(+)				not used
500639.ENTCAN_06506	(+)
500639.ENTCAN_09175	(+)
500639.ENTCAN_06699	(+)
500639.ENTCAN_06692	(+)
500639.ENTCAN_07902	(+)
500639.ENTCAN_07128	(+)
500639.ENTCAN_07826	(+)				not used
500639.ENTCAN_09509	(+)
500639.ENTCAN_05967	(+)
500639.ENTCAN_07702	(+)
500639.ENTCAN_09254	(+)
500639.ENTCAN_09657	(+)
500639.ENTCAN_05742	(+)
500639.ENTCAN_07282	(+)				not used
500639.ENTCAN_05590	(+)
500639.ENTCAN_05592	(+)
500639.ENTCAN_05802	(+)
500639.ENTCAN_05565	(+)				not used
500639.ENTCAN_05562	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================