Effective results for Mitsuokella multacida DSM 20544 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 28 proteins (6 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
500635.MITSMUL_03453				(PF12323)	mitochondrial; (mitochondrial)
500635.MITSMUL_03452				(PF12323)	(mitochondrial)
500635.MITSMUL_05506				(PF00939)	ER
500635.MITSMUL_05420				(PF12323)	mitochondrial; (mitochondrial)
500635.MITSMUL_05328				(PF00939)	ER
500635.MITSMUL_04743				(PF00939)	ER
500635.MITSMUL_04971				PF14566	ER
500635.MITSMUL_04565				(PF00939)	ER
500635.MITSMUL_03099				(PF13597)	(mitochondrial)
500635.MITSMUL_03298				(PF12323)	ER; (ER)
500635.MITSMUL_05609				PF14566	ER
500635.MITSMUL_04162				(PF12323)	(mitochondrial)
500635.MITSMUL_04492				PF03727 PF00349
500635.MITSMUL_05610				PF14566
500635.MITSMUL_03831				PF00641
500635.MITSMUL_04063				(PF12323)
500635.MITSMUL_03311				(PF12323)
500635.MITSMUL_05251				(PF12646)
500635.MITSMUL_03920				(PF00939)
500635.MITSMUL_04088				(PF12323)
500635.MITSMUL_04521				(PF13597)
500635.MITSMUL_03186				PF05203
500635.MITSMUL_05568				(PF01795)
500635.MITSMUL_04284				(PF12323)
500635.MITSMUL_04604				(PF01795)
500635.MITSMUL_04991				(PF12323)
500635.MITSMUL_05006				(PF12323)
500635.MITSMUL_04004				(PF13597)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================