Metamenu

Effective results for Heliobacterium modesticaldum Ice1 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 93 proteins (41 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
498761.HM1_0656(PF10693)ER
498761.HM1_0657(PF12159)ER
498761.HM1_2043(PF00037)(mitochondrial)
498761.HM1_0612(PF06094)(mitochondrial)
498761.HM1_1319(PF04886)ER
498761.HM1_0137(PF07679)ER
498761.HM1_0138(PF07679)ER
498761.HM1_1062(PF02675)(mitochondrial)
498761.HM1_0763PF03727 PF00349
498761.HM1_2269PF05598
498761.HM1_1603(PF00162)
498761.HM1_1462(PF00037)not used
498761.HM1_0028PF05598
498761.HM1_2650PF05598
498761.HM1_2074(PF01964)
498761.HM1_2073(PF01964)
498761.HM1_0383(PF00078)
498761.HM1_0030(PF00078)
498761.HM1_2660(PF00078)
498761.HM1_1663(PF00078)
498761.HM1_0532(PF00037)
498761.HM1_2708(PF00078)
498761.HM1_1654PF05598
498761.HM1_0639(PF00078)
498761.HM1_1231PF05598
498761.HM1_1239PF05598
498761.HM1_0527PF05598
498761.HM1_0521PF05598
498761.HM1_0746PF05598
498761.HM1_0747(PF00078)
498761.HM1_1909(PF00078)
498761.HM1_0935(PF00078)
498761.HM1_2596(PF00078)
498761.HM1_1641(PF02675)
498761.HM1_1649PF05598
498761.HM1_0607PF12224
498761.HM1_1739PF05598
498761.HM1_0179PF05598
498761.HM1_0172(PF00078)
498761.HM1_3072PF05598
498761.HM1_2613(PF00037)
498761.HM1_2614(PF00078)
498761.HM1_1744(PF00037)
498761.HM1_0611PF12224
498761.HM1_1745(PF00037)
498761.HM1_0504PF05598
498761.HM1_2629PF05598
498761.HM1_2956(PF06094)
498761.HM1_2955PF12224
498761.HM1_2551(PF00078)
498761.HM1_1028(PF00037)
498761.HM1_1029(PF00037)
498761.HM1_0153PF05598
498761.HM1_2949PF05598
498761.HM1_1567PF05598
498761.HM1_1563PF05598
498761.HM1_1562PF05598
498761.HM1_1561PF05598
498761.HM1_1169PF05598
498761.HM1_0145(PF07679)
498761.HM1_0148PF05598
498761.HM1_0520PF05598
498761.HM1_2795(PF16760)
498761.HM1_2950PF12224
498761.HM1_2574(PF00078)
498761.HM1_2484(PF00037)
498761.HM1_0224(PF00037)
498761.HM1_1312(PF00162)
498761.HM1_1314PF05598
498761.HM1_2557(PF06094)
498761.HM1_2788(PF00037)
498761.HM1_1145PF05598
498761.HM1_0937(PF00078)
498761.HM1_0202(PF01964)
498761.HM1_1336(PF00078)
498761.HM1_3011(PF00078)
498761.HM1_0928PF05598
498761.HM1_2235PF05598
498761.HM1_1635(PF00078)
498761.HM1_0215(PF02675)
498761.HM1_0211PF05598
498761.HM1_0860(PF00037)
498761.HM1_1441PF05598
498761.HM1_3100(PF00078)
498761.HM1_0482(PF00037)
498761.HM1_1506PF05598
498761.HM1_1617(PF00037)
498761.HM1_1618PF05598
498761.HM1_0013PF05598
498761.HM1_1870PF05598
498761.HM1_2739PF05598
498761.HM1_2885PF12224
498761.HM1_2884(PF06094)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================