Metamenu

Effective results for Borrelia spielmanii A14S (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 12 proteins (0 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
498742.BSPA14S_0385(PF02608)ER
498742.BSPA14S_0384(PF02608)ER
498742.BSPA14S_0896(PF02608)ER
498742.BSPA14S_0378(PF02608)ER
498742.BSPA14S_0379(PF02608)ER
498742.BSPA14S_0318(PF02608)ER
498742.BSPA14S_0893(PF02608)ER; not used
498742.BSPA14S_0873(PF00318)not used
498742.BSPA14S_0874(PF00318)
498742.BSPA14S_0895(PF02608)not used
498742.BSPA14S_0523(PF01409)
498742.BSPA14S_0524(PF01409)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================