Metamenu

Effective results for Rhizobium etli CIAT 652 (eggnog40)

Summary

Number of putative secreted proteins: 114
- Predicted by T4SEpre: 93
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 40 proteins (1 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
491916.RHECIAT_CH0000693+(PF02735)mitochondrial; (mitochondrial)
491916.RHECIAT_CH0000691+(PF02735)(mitochondrial)
491916.RHECIAT_CH0000186+ER
491916.RHECIAT_CH0000957+ER
491916.RHECIAT_CH0002166+ER
491916.RHECIAT_CH0002384(PF04120)(mitochondrial)
491916.RHECIAT_CH0001440+mitochondrial
491916.RHECIAT_CH0001155(PF02586)mitochondrial
491916.RHECIAT_CH0003183+ER
491916.RHECIAT_CH0004091(PF13449)ER
491916.RHECIAT_CH0001885(PF04120)mitochondrial
491916.RHECIAT_CH0001561(PF13449)ER
491916.RHECIAT_CH0000904+ER
491916.RHECIAT_CH0001976(PF04800)(mitochondrial)
491916.RHECIAT_CH0000801+ER
491916.RHECIAT_CH0000109+ER
491916.RHECIAT_CH0003219+(ER)
491916.RHECIAT_CH0002276(PF13449)ER
491916.RHECIAT_CH0002304+(ER)
491916.RHECIAT_CH0001204+mitochondrial; (mitochondrial)
491916.RHECIAT_CH0001688(PF06455)ER
491916.RHECIAT_CH0004038+ER
491916.RHECIAT_CH0002425+mitochondrial
491916.RHECIAT_CH0002330+ER
491916.RHECIAT_CH0001782+ER
491916.RHECIAT_CH0004009PF12772(mitochondrial)
491916.RHECIAT_CH0003097(PF14295)ER
491916.RHECIAT_CH0001648+ER
491916.RHECIAT_CH0003265+ER; (ER)
491916.RHECIAT_CH0002687+ER
491916.RHECIAT_CH0001079+ER
491916.RHECIAT_CH0003323(PF02735)(mitochondrial)
491916.RHECIAT_CH0001664(PF13449)ER
491916.RHECIAT_CH0003416+(ER)
491916.RHECIAT_CH0001884+(PF04120)
491916.RHECIAT_CH0001263+(ER)
491916.RHECIAT_CH0003324(PF02735)(mitochondrial)
491916.RHECIAT_CH0004044+(mitochondrial)
491916.RHECIAT_CH0004172+(plastid)
491916.RHECIAT_CH0000741+(mitochondrial)
491916.RHECIAT_CH0000328+(mitochondrial)
491916.RHECIAT_CH0003737+(mitochondrial)
491916.RHECIAT_CH0002559+(mitochondrial)
491916.RHECIAT_CH0001533+plastid
491916.RHECIAT_CH0004218+(ER)
491916.RHECIAT_CH0000747+plastid
491916.RHECIAT_CH0003331+(PF02586)
491916.RHECIAT_CH0003599+
491916.RHECIAT_CH0003116(PF04828)
491916.RHECIAT_CH0000095+
491916.RHECIAT_CH0003295+
491916.RHECIAT_CH0002364+
491916.RHECIAT_CH0001133+
491916.RHECIAT_CH0003422(PF02586)
491916.RHECIAT_CH0003772+
491916.RHECIAT_CH0002000+
491916.RHECIAT_CH0002485+
491916.RHECIAT_CH0001857+
491916.RHECIAT_CH0001855+
491916.RHECIAT_CH0000021+
491916.RHECIAT_CH0001144(PF04828)
491916.RHECIAT_CH0000627+
491916.RHECIAT_CH0001710+
491916.RHECIAT_CH0001717+
491916.RHECIAT_CH0004090(PF13238)
491916.RHECIAT_CH0004093+
491916.RHECIAT_CH0000374(PF04828)
491916.RHECIAT_CH0003714+
491916.RHECIAT_CH0002712(PF04828)
491916.RHECIAT_CH0000972(PF13238)
491916.RHECIAT_CH0001099(PF13238)
491916.RHECIAT_CH0001886+
491916.RHECIAT_CH0001772+
491916.RHECIAT_CH0001170(PF04828)
491916.RHECIAT_CH0000289+
491916.RHECIAT_CH0000594+
491916.RHECIAT_CH0004271+
491916.RHECIAT_CH0000280(PF04828)
491916.RHECIAT_CH0000913+
491916.RHECIAT_CH0002462(PF04828)
491916.RHECIAT_CH0003172+
491916.RHECIAT_CH0002124+
491916.RHECIAT_CH0000169+
491916.RHECIAT_CH0000900+
491916.RHECIAT_CH0000837+
491916.RHECIAT_CH0003825+
491916.RHECIAT_CH0002063+
491916.RHECIAT_CH0002081(PF02586)
491916.RHECIAT_CH0003470+
491916.RHECIAT_CH0000635(PF04828)
491916.RHECIAT_CH0002677(PF02586)
491916.RHECIAT_CH0002674+
491916.RHECIAT_CH0001333(PF04800)
491916.RHECIAT_CH0000130+
491916.RHECIAT_CH0001839+
491916.RHECIAT_CH0002266+
491916.RHECIAT_CH0003276+
491916.RHECIAT_CH0002438(PF01442)
491916.RHECIAT_CH0002750+
491916.RHECIAT_CH0000666+
491916.RHECIAT_CH0004301(PF08975)
491916.RHECIAT_CH0002356+
491916.RHECIAT_CH0001492(PF04828)
491916.RHECIAT_CH0001493(PF04828)
491916.RHECIAT_CH0001491(PF04828)
491916.RHECIAT_CH0002053+
491916.RHECIAT_CH0003413+
491916.RHECIAT_CH0000854+
491916.RHECIAT_CH0002237+
491916.RHECIAT_CH0002122(PF04828)
491916.RHECIAT_CH0002691+
491916.RHECIAT_CH0001809(PF04828)
491916.RHECIAT_CH0003110+
491916.RHECIAT_CH0001478(PF02586)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================