Effective results for Neisseria lactamica 020-06 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 24 proteins (7 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
489653.NLA_19680(PF13518)(mitochondrial)
489653.NLA_12760(PF13518)(mitochondrial)
489653.NLA_8880PF13332mitochondrial; (mitochondrial)
489653.NLA_8270(PF13518)(mitochondrial)
489653.NLA_10260(PF03083)(ER)
489653.NLA_8550PF13332(ER)
489653.NLA_6860(PF13518)(mitochondrial)
489653.NLA_6870(PF00145)
489653.NLA_18330(PF13518)
489653.NLA_12990(PF00145)
489653.NLA_17960(PF03083)
489653.NLA_14100(PF00145)
489653.NLA_8450(PF13518)
489653.NLA_19510(PF00145)
489653.NLA_15070(PF00145)
489653.NLA_10840(PF00145)
489653.NLA_10070PF13332
489653.NLA_8290PF13332
489653.NLA_8610PF13332
489653.NLA_12660(PF13518)
489653.NLA_16310(PF11969)
489653.NLA_1720(PF00145)
489653.NLA_8490PF13332
489653.NLA_8540PF13332

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================