Effective results for Candidatus Puniceispirillum marinum IMCC1322 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 24 proteins (1 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
488538.SAR116_0544(PF16350) (PF01571) (PF08669)ER
488538.SAR116_1059(PF16350) (PF01571) (PF08669)(ER)
488538.SAR116_2172(PF01571) (PF08669)(mitochondrial)
488538.SAR116_0263(PF16350) (PF01571) (PF08669)(mitochondrial)
488538.SAR116_1329(PF01571) (PF08669)(ER)
488538.SAR116_1183(PF16350) (PF01571) (PF08669)
488538.SAR116_1184(PF16350) (PF01571) (PF08669)
488538.SAR116_2173(PF16350) (PF01571) (PF08669)
488538.SAR116_0074(PF01571) (PF08669)(mitochondrial)
488538.SAR116_0916(PF01571) (PF08669)
488538.SAR116_1705(PF06241)(ER)
488538.SAR116_0241(PF01571) (PF08669)
488538.SAR116_0343(PF01571) (PF08669)
488538.SAR116_1344(PF01571) (PF08669)
488538.SAR116_0395PF14700 (PF00940)
488538.SAR116_0235(PF01571) (PF08669)
488538.SAR116_1056(PF01571) (PF08669)
488538.SAR116_2088(PF14330)(mitochondrial)
488538.SAR116_0873(PF01765)
488538.SAR116_0516(PF01765)
488538.SAR116_1804(PF00070)
488538.SAR116_0177(PF01786)
488538.SAR116_0137(PF09585)
488538.SAR116_0136(PF09585)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================