Metamenu

Effective results for Fusobacterium varium ATCC 27725 (eggnog40)

Summary

Number of putative secreted proteins: 149
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 149 proteins (76 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469618.FVAG_00820PF03797mitochondrial
469618.FVAG_02981PF00216(mitochondrial)
469618.FVAG_02378(PF03553)ER
469618.FVAG_01377(PF03553)ER
469618.FVAG_01247PF03797ER
469618.FVAG_02344(PF01554)ER
469618.FVAG_00849(PF01554)(ER)
469618.FVAG_02521PF03797ER
469618.FVAG_02235PF03797ER
469618.FVAG_01984(PF12821)ER
469618.FVAG_01401(PF03553)ER
469618.FVAG_01403(PF03553)ER
469618.FVAG_00095(PF01554)ER
469618.FVAG_01426(PF01554)ER
469618.FVAG_00334(PF03553)ER
469618.FVAG_02797(PF03553)ER
469618.FVAG_02015(PF12821)ER
469618.FVAG_00438(PF03553)ER
469618.FVAG_02312(PF01554)ER
469618.FVAG_02000(PF03553)ER
469618.FVAG_01912(PF03553)ER
469618.FVAG_02480(PF03553)ER
469618.FVAG_01596(PF03553)ER
469618.FVAG_00637PF04572 (PF04488)(mitochondrial)
469618.FVAG_01805(PF01554)ER
469618.FVAG_02036(PF07687) (PF01546)(mitochondrial)
469618.FVAG_01702(PF12821)ER
469618.FVAG_01039(PF01554)ER; (ER)
469618.FVAG_02045PF03797ER
469618.FVAG_00131PF00216(mitochondrial)
469618.FVAG_01063PF03797ER
469618.FVAG_02660(PF07687) (PF01546)
469618.FVAG_01070(PF07687) (PF01546)
469618.FVAG_02174(PF07687) (PF01546)
469618.FVAG_00939PF00216(mitochondrial)
469618.FVAG_02983PF03797(mitochondrial)
469618.FVAG_03014PF03797(mitochondrial)
469618.FVAG_00053(PF07687) (PF01546)
469618.FVAG_01893(PF07687) (PF01546)
469618.FVAG_02692PF00216(mitochondrial)
469618.FVAG_02529PF00216(mitochondrial)
469618.FVAG_02038(PF07687) (PF01546)
469618.FVAG_02034(PF07687) (PF01546)
469618.FVAG_00677PF03797(mitochondrial)
469618.FVAG_00676PF03797(mitochondrial)
469618.FVAG_02793(PF07687) (PF01546)
469618.FVAG_02010PF03797(mitochondrial)
469618.FVAG_03051PF03797(mitochondrial)
469618.FVAG_02658(PF07687) (PF01546)
469618.FVAG_01913(PF07687) (PF01546)
469618.FVAG_01591(PF07687) (PF01546)
469618.FVAG_01350(PF07687) (PF01546)
469618.FVAG_02070(PF05034) (PF07476)
469618.FVAG_01982(PF07687) (PF01546)
469618.FVAG_02580(PF07687) (PF01546)
469618.FVAG_01162(PF07687) (PF01546)
469618.FVAG_01970(PF07687) (PF01546)
469618.FVAG_00754PF03797(mitochondrial)
469618.FVAG_01963(PF07687) (PF01546)
469618.FVAG_01388(PF01554)(ER)
469618.FVAG_00439(PF07687) (PF01546)
469618.FVAG_01950(PF07687) (PF01546)
469618.FVAG_00942PF00216(mitochondrial)
469618.FVAG_00940PF03797(mitochondrial)
469618.FVAG_02967(PF07687) (PF01546)
469618.FVAG_00235(PF07687) (PF01546)
469618.FVAG_00234(PF07687) (PF01546)
469618.FVAG_02153(PF07687) (PF01546)
469618.FVAG_02404(PF07687) (PF01546)
469618.FVAG_02402PF03797(mitochondrial)
469618.FVAG_02167(PF07687) (PF01546)
469618.FVAG_02367(PF07687) (PF01546)
469618.FVAG_03012PF03797
469618.FVAG_03104PF00216
469618.FVAG_02982PF00216
469618.FVAG_01858PF03797
469618.FVAG_01452(PF01554)
469618.FVAG_01679PF00216
469618.FVAG_02509(PF01546)
469618.FVAG_00938PF00216
469618.FVAG_02994PF00216
469618.FVAG_01246PF03797
469618.FVAG_02691PF03797
469618.FVAG_02519PF00216
469618.FVAG_03103PF00216
469618.FVAG_02348(PF01554)
469618.FVAG_00848(PF01554)
469618.FVAG_01624(PF01546)
469618.FVAG_03015PF00216
469618.FVAG_02693PF00216
469618.FVAG_02522PF00216
469618.FVAG_02520PF00216
469618.FVAG_02528PF00216
469618.FVAG_00684PF00216
469618.FVAG_00683PF00216
469618.FVAG_01137PF00216
469618.FVAG_01138PF00216
469618.FVAG_03019PF00216
469618.FVAG_02220(PF01554)
469618.FVAG_00861PF00216
469618.FVAG_00679PF00216
469618.FVAG_00678PF00216
469618.FVAG_03072PF00216
469618.FVAG_03073PF00216
469618.FVAG_01782PF00216
469618.FVAG_01121(PF01554)
469618.FVAG_02027(PF01554)
469618.FVAG_03041PF03797
469618.FVAG_00085PF05203
469618.FVAG_01202(PF01554)
469618.FVAG_02792(PF03553)
469618.FVAG_02794(PF12437)
469618.FVAG_02014PF00216
469618.FVAG_00343PF06176
469618.FVAG_01108PF00216
469618.FVAG_01109PF00216
469618.FVAG_00356PF06176
469618.FVAG_00355(PF04488)
469618.FVAG_00511PF00216not used
469618.FVAG_01778(PF01546)
469618.FVAG_01971(PF07687)
469618.FVAG_00752PF00216
469618.FVAG_00753PF00216
469618.FVAG_00176(PF07687)
469618.FVAG_02441(PF03553)
469618.FVAG_00966PF00216
469618.FVAG_01964(PF01554)
469618.FVAG_00547PF00216
469618.FVAG_00546PF00216
469618.FVAG_02433PF00216
469618.FVAG_00776PF00157
469618.FVAG_02603(PF01554)
469618.FVAG_02428PF00216
469618.FVAG_02429PF00216
469618.FVAG_02148(PF01554)
469618.FVAG_02092PF00216
469618.FVAG_02091PF00216
469618.FVAG_00941PF00216
469618.FVAG_00015(PF12437)
469618.FVAG_01726(PF01554)
469618.FVAG_02415(PF01554)
469618.FVAG_02568PF06176
469618.FVAG_00956(PF03059)
469618.FVAG_02979PF03797
469618.FVAG_03020PF00216
469618.FVAG_03027PF03797
469618.FVAG_03029PF03797
469618.FVAG_01196PF00216
469618.FVAG_01067PF00216

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================