Metamenu

Effective results for Fusobacterium ulcerans ATCC 49185 (eggnog40)

Summary

Number of putative secreted proteins: 164
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 164 proteins (104 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469617.FUAG_01864PF03797(mitochondrial)
469617.FUAG_03115PF00216(mitochondrial)
469617.FUAG_01877PF00216(mitochondrial); mitochondrial
469617.FUAG_01875PF03797(mitochondrial)
469617.FUAG_01050PF03553ER
469617.FUAG_00905PF03797ER
469617.FUAG_02105PF03797ER
469617.FUAG_00263PF03553ER
469617.FUAG_01423(PF12821)ER
469617.FUAG_00675PF03797ER
469617.FUAG_01895(PF01554)(ER)
469617.FUAG_03012PF03553ER
469617.FUAG_02627PF00216(mitochondrial)
469617.FUAG_02372PF03553ER
469617.FUAG_01069PF03553ER
469617.FUAG_02683PF03553ER
469617.FUAG_00728(PF07687)(mitochondrial)
469617.FUAG_00104(PF01554)ER
469617.FUAG_01147(PF01554)ER
469617.FUAG_01098PF03553ER
469617.FUAG_02816(PF01554)ER
469617.FUAG_01702PF03553ER
469617.FUAG_02776PF00216(mitochondrial)
469617.FUAG_02393PF08399ER
469617.FUAG_01763(PF01554)ER
469617.FUAG_02128(PF01554)(mitochondrial)
469617.FUAG_00760PF03797ER
469617.FUAG_00769PF03553ER
469617.FUAG_01038PF03553ER
469617.FUAG_01005(PF03162)ER
469617.FUAG_00699PF03553ER
469617.FUAG_00690PF03797mitochondrial
469617.FUAG_00231PF03553ER
469617.FUAG_00521PF03553ER
469617.FUAG_01121PF03553ER
469617.FUAG_01123PF03553ER
469617.FUAG_01011(PF01554)ER; (ER)
469617.FUAG_00753(PF12821)ER; (ER)
469617.FUAG_00354PF03553ER
469617.FUAG_02263PF00216(mitochondrial)
469617.FUAG_01320PF03553ER
469617.FUAG_01674PF00216(mitochondrial)
469617.FUAG_02768PF00216(mitochondrial)
469617.FUAG_02407PF03797(mitochondrial)
469617.FUAG_00651(PF05034) (PF07476)
469617.FUAG_00005(PF01554)(ER)
469617.FUAG_02364(PF01554)(mitochondrial)
469617.FUAG_03150PF03797(plastid)
469617.FUAG_02734PF00216(mitochondrial)
469617.FUAG_00781(PF12821)(ER)
469617.FUAG_00796(PF07687)
469617.FUAG_00249(PF07687)
469617.FUAG_01315PF00216
469617.FUAG_01045(PF07687)
469617.FUAG_00980PF00216
469617.FUAG_02408PF00216
469617.FUAG_02409PF00216
469617.FUAG_03114PF00216
469617.FUAG_03113PF03797
469617.FUAG_03112PF03797
469617.FUAG_01304(PF07687)
469617.FUAG_01876PF00216
469617.FUAG_01051(PF07687)
469617.FUAG_00873(PF07687)
469617.FUAG_02340(PF01554)
469617.FUAG_00003(PF02256)
469617.FUAG_00860(PF07687)
469617.FUAG_03009(PF07687)
469617.FUAG_03008PF03553
469617.FUAG_00455PF03797
469617.FUAG_00079PF00216
469617.FUAG_01502(PF07687)
469617.FUAG_00859(PF01554)
469617.FUAG_01894(PF01554)
469617.FUAG_00061(PF07687)not used
469617.FUAG_01523(PF07687)
469617.FUAG_01532(PF01554)
469617.FUAG_02626PF00216
469617.FUAG_03156(PF07687)
469617.FUAG_00436(PF01554)
469617.FUAG_00726(PF07687)
469617.FUAG_02767PF00216
469617.FUAG_02766PF03797
469617.FUAG_00948PF00216
469617.FUAG_01708PF00216
469617.FUAG_01707PF00216
469617.FUAG_03142(PF01554)
469617.FUAG_00730(PF07687)
469617.FUAG_00736(PF02256)
469617.FUAG_01395PF00216
469617.FUAG_02603PF00216
469617.FUAG_01178(PF01554)
469617.FUAG_02775PF00216
469617.FUAG_02777(PF07687)
469617.FUAG_00095PF05203
469617.FUAG_00093(PF01554)not used
469617.FUAG_00416PF00216
469617.FUAG_00415PF00216
469617.FUAG_00414PF03797
469617.FUAG_02014(PF07687)
469617.FUAG_00629PF00216
469617.FUAG_00716(PF07687)
469617.FUAG_00080PF00216
469617.FUAG_01976PF00216
469617.FUAG_01975PF00216
469617.FUAG_01974PF00216
469617.FUAG_01570PF00216
469617.FUAG_00979PF03797
469617.FUAG_00364PF06176
469617.FUAG_01969(PF01554)
469617.FUAG_00189(PF07687)
469617.FUAG_01107(PF01554)
469617.FUAG_02855PF00216
469617.FUAG_02856PF00216
469617.FUAG_02101PF00216
469617.FUAG_00375PF06176
469617.FUAG_00519PF00216
469617.FUAG_01917PF03553
469617.FUAG_01919PF02037
469617.FUAG_02604PF00216
469617.FUAG_02733PF00216
469617.FUAG_02201PF05203
469617.FUAG_00698(PF07687)
469617.FUAG_00741(PF01554)
469617.FUAG_01909PF00216
469617.FUAG_00522(PF07687)
469617.FUAG_00520PF00216
469617.FUAG_02693(PF07687)
469617.FUAG_01015(PF01554)
469617.FUAG_02057(PF01554)
469617.FUAG_02479PF03797
469617.FUAG_00981PF00216
469617.FUAG_01658PF04572
469617.FUAG_01652(PF01419)
469617.FUAG_00688PF00216
469617.FUAG_00689PF00216
469617.FUAG_00754PF00216
469617.FUAG_00756PF00216
469617.FUAG_01335PF03797
469617.FUAG_01334PF00216
469617.FUAG_01337PF00216
469617.FUAG_02045PF03797
469617.FUAG_02042PF00216
469617.FUAG_02043PF00216
469617.FUAG_02041PF03797
469617.FUAG_01460(PF02256)
469617.FUAG_02264PF00216
469617.FUAG_02265PF03797
469617.FUAG_02313PF03797
469617.FUAG_02314PF00216
469617.FUAG_02315PF00216
469617.FUAG_03131(PF07687)
469617.FUAG_00783(PF07687)
469617.FUAG_00250(PF07687)
469617.FUAG_01495(PF07687)
469617.FUAG_01492PF00216
469617.FUAG_01493PF03797
469617.FUAG_01787PF00216
469617.FUAG_01675PF00216
469617.FUAG_01676PF03797
469617.FUAG_02414(PF01554)
469617.FUAG_02897PF06176
469617.FUAG_02257(PF03059)
469617.FUAG_02098(PF07687)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================