Effective results for Enterobacteriaceae bacterium 9_2_54FAA (eggnog40)

Summary

Number of putative secreted proteins: 176
- Predicted by T4SEpre: 114
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 80 proteins (15 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469613.HMPREF0864_03621+(PF00577)ER
469613.HMPREF0864_00872+(PF03797)ER
469613.HMPREF0864_03951+ER
469613.HMPREF0864_01334+ER
469613.HMPREF0864_01761(PF00577)ER
469613.HMPREF0864_00146(PF03797)ER
469613.HMPREF0864_04048(PF01228)(mitochondrial)
469613.HMPREF0864_02432+(ER); ER
469613.HMPREF0864_02059(PF13347)(ER)
469613.HMPREF0864_01026(PF03797)ER
469613.HMPREF0864_00426+ER
469613.HMPREF0864_03152+mitochondrial; (mitochondrial)
469613.HMPREF0864_04105+ER
469613.HMPREF0864_02338+ER
469613.HMPREF0864_01924(PF04187)ER
469613.HMPREF0864_03185+ER
469613.HMPREF0864_03632(PF00854)(ER)
469613.HMPREF0864_00535(PF00577)ER
469613.HMPREF0864_00407+ER
469613.HMPREF0864_00409+ER
469613.HMPREF0864_03441PF03400ER
469613.HMPREF0864_03443(PF00328)ER
469613.HMPREF0864_02716+(mitochondrial)
469613.HMPREF0864_00742(PF00577)ER
469613.HMPREF0864_02271(PF04187)ER
469613.HMPREF0864_03619+ER
469613.HMPREF0864_00889+(ER)
469613.HMPREF0864_00462+ER
469613.HMPREF0864_02586+ER
469613.HMPREF0864_04063+ER
469613.HMPREF0864_00898(PF00328)(mitochondrial)
469613.HMPREF0864_00478+ER
469613.HMPREF0864_03545+(mitochondrial)
469613.HMPREF0864_03079(PF00577)ER
469613.HMPREF0864_00460+ER
469613.HMPREF0864_00396+ER
469613.HMPREF0864_01392PF03400ER
469613.HMPREF0864_01388(PF03797)ER
469613.HMPREF0864_03064(PF00577)(ER)
469613.HMPREF0864_03062+ER
469613.HMPREF0864_02665+ER
469613.HMPREF0864_03397+(mitochondrial); ER
469613.HMPREF0864_03938+ER
469613.HMPREF0864_02284(PF00577)ER
469613.HMPREF0864_04007+ER
469613.HMPREF0864_01923+ER
469613.HMPREF0864_00873(PF03797)ER
469613.HMPREF0864_04110+(ER)
469613.HMPREF0864_03900+mitochondrial
469613.HMPREF0864_01469+ER
469613.HMPREF0864_02643+ER
469613.HMPREF0864_02354(PF00854)ER
469613.HMPREF0864_00934+ER
469613.HMPREF0864_00858+ER
469613.HMPREF0864_00777+ER
469613.HMPREF0864_00321+ER
469613.HMPREF0864_01983(PF05524)(mitochondrial)
469613.HMPREF0864_03969+(ER); ER
469613.HMPREF0864_01333(PF03797)(ER)
469613.HMPREF0864_00009+ER
469613.HMPREF0864_02080+ER
469613.HMPREF0864_02577+ER
469613.HMPREF0864_00127(PF00577)(ER)
469613.HMPREF0864_03653+ER
469613.HMPREF0864_01940(PF00577)(mitochondrial)
469613.HMPREF0864_01948(PF03797)(mitochondrial)
469613.HMPREF0864_02890+(ER)
469613.HMPREF0864_00804+ER
469613.HMPREF0864_00370(PF02112)ER
469613.HMPREF0864_01567+(mitochondrial)
469613.HMPREF0864_00960(PF00854)(plastid)
469613.HMPREF0864_02718(PF01276) (PF03711)
469613.HMPREF0864_03299+(ER)
469613.HMPREF0864_03503+(mitochondrial)
469613.HMPREF0864_03871(PF03797)plastid
469613.HMPREF0864_02647(PF01276) (PF03711)
469613.HMPREF0864_00039+(plastid)
469613.HMPREF0864_00284+(mitochondrial)
469613.HMPREF0864_04112(PF02357)(plastid)
469613.HMPREF0864_04051(PF05524)(plastid)
469613.HMPREF0864_02355(PF01276) (PF03711)
469613.HMPREF0864_00936(PF01276) (PF03711)
469613.HMPREF0864_00586+(mitochondrial)
469613.HMPREF0864_01196+(mitochondrial)
469613.HMPREF0864_03684(PF01276) (PF03711)
469613.HMPREF0864_02311PF03400
469613.HMPREF0864_01789+
469613.HMPREF0864_00780+
469613.HMPREF0864_00784+
469613.HMPREF0864_00145(PF03797)
469613.HMPREF0864_03579+
469613.HMPREF0864_02304(PF03797)not used
469613.HMPREF0864_01960+
469613.HMPREF0864_02384+
469613.HMPREF0864_04106PF03400
469613.HMPREF0864_03422+
469613.HMPREF0864_02444(PF13347)
469613.HMPREF0864_01513+
469613.HMPREF0864_00169+
469613.HMPREF0864_00181+
469613.HMPREF0864_00506+
469613.HMPREF0864_02213+
469613.HMPREF0864_03408+
469613.HMPREF0864_00983+
469613.HMPREF0864_02101(PF13347)
469613.HMPREF0864_01845+
469613.HMPREF0864_01352+
469613.HMPREF0864_01322+
469613.HMPREF0864_03476+
469613.HMPREF0864_02663(PF13347)
469613.HMPREF0864_01490+
469613.HMPREF0864_02484+
469613.HMPREF0864_02004(PF13347)
469613.HMPREF0864_02876+
469613.HMPREF0864_02712(PF05524)
469613.HMPREF0864_01726+
469613.HMPREF0864_04155PF03400
469613.HMPREF0864_00251(PF16804)
469613.HMPREF0864_02874+
469613.HMPREF0864_01286(PF00854)
469613.HMPREF0864_01738PF03400
469613.HMPREF0864_01739+
469613.HMPREF0864_00649(PF01228)
469613.HMPREF0864_04098(PF02357)
469613.HMPREF0864_00469(PF05524)
469613.HMPREF0864_02859+
469613.HMPREF0864_03282+
469613.HMPREF0864_03284+
469613.HMPREF0864_03604+
469613.HMPREF0864_00724+
469613.HMPREF0864_00272+
469613.HMPREF0864_03949+
469613.HMPREF0864_02380+
469613.HMPREF0864_03704(PF05524)
469613.HMPREF0864_03832+
469613.HMPREF0864_02039+
469613.HMPREF0864_01391(PF03797)
469613.HMPREF0864_00861(PF02357)
469613.HMPREF0864_01404(PF13347)
469613.HMPREF0864_04162PF03400
469613.HMPREF0864_00281+
469613.HMPREF0864_03060PF12520
469613.HMPREF0864_03710(PF13347)
469613.HMPREF0864_01095+
469613.HMPREF0864_03125(PF05524)
469613.HMPREF0864_02294(PF13347)
469613.HMPREF0864_02630+
469613.HMPREF0864_04114+
469613.HMPREF0864_00027+
469613.HMPREF0864_02349+
469613.HMPREF0864_03911(PF06176)
469613.HMPREF0864_03824+
469613.HMPREF0864_02515(PF00577)
469613.HMPREF0864_01678(PF04765)
469613.HMPREF0864_01217PF03400
469613.HMPREF0864_01216PF03400not used
469613.HMPREF0864_01520(PF01228)
469613.HMPREF0864_04134PF03400not used
469613.HMPREF0864_03100+
469613.HMPREF0864_03690(PF01490)
469613.HMPREF0864_01208PF03400
469613.HMPREF0864_01207PF03400
469613.HMPREF0864_00625+
469613.HMPREF0864_01539(PF00854)
469613.HMPREF0864_04122+
469613.HMPREF0864_04120PF03400not used
469613.HMPREF0864_02664(PF13347)
469613.HMPREF0864_03688(PF01228)
469613.HMPREF0864_02887(PF03797)not used
469613.HMPREF0864_01233+
469613.HMPREF0864_00634+
469613.HMPREF0864_04067(PF02357)
469613.HMPREF0864_01300PF03400not used
469613.HMPREF0864_01316+
469613.HMPREF0864_00572+
469613.HMPREF0864_00206(PF01228)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================