Effective results for Enterobacteriaceae bacterium 9_2_54FAA (eggnog40)
Summary
Number of putative secreted proteins: 176
- Predicted by T4SEpre: 114
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 80 proteins (15 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 469613.HMPREF0864_03621 | + | (PF00577) | ER | ||
| 469613.HMPREF0864_00872 | + | (PF03797) | ER | ||
| 469613.HMPREF0864_03951 | + | ER | |||
| 469613.HMPREF0864_01334 | + | ER | |||
| 469613.HMPREF0864_01761 | (PF00577) | ER | |||
| 469613.HMPREF0864_00146 | (PF03797) | ER | |||
| 469613.HMPREF0864_04048 | (PF01228) | (mitochondrial) | |||
| 469613.HMPREF0864_02432 | + | (ER); ER | |||
| 469613.HMPREF0864_02059 | (PF13347) | (ER) | |||
| 469613.HMPREF0864_01026 | (PF03797) | ER | |||
| 469613.HMPREF0864_00426 | + | ER | |||
| 469613.HMPREF0864_03152 | + | mitochondrial; (mitochondrial) | |||
| 469613.HMPREF0864_04105 | + | ER | |||
| 469613.HMPREF0864_02338 | + | ER | |||
| 469613.HMPREF0864_01924 | (PF04187) | ER | |||
| 469613.HMPREF0864_03185 | + | ER | |||
| 469613.HMPREF0864_03632 | (PF00854) | (ER) | |||
| 469613.HMPREF0864_00535 | (PF00577) | ER | |||
| 469613.HMPREF0864_00407 | + | ER | |||
| 469613.HMPREF0864_00409 | + | ER | |||
| 469613.HMPREF0864_03441 | PF03400 | ER | |||
| 469613.HMPREF0864_03443 | (PF00328) | ER | |||
| 469613.HMPREF0864_02716 | + | (mitochondrial) | |||
| 469613.HMPREF0864_00742 | (PF00577) | ER | |||
| 469613.HMPREF0864_02271 | (PF04187) | ER | |||
| 469613.HMPREF0864_03619 | + | ER | |||
| 469613.HMPREF0864_00889 | + | (ER) | |||
| 469613.HMPREF0864_00462 | + | ER | |||
| 469613.HMPREF0864_02586 | + | ER | |||
| 469613.HMPREF0864_04063 | + | ER | |||
| 469613.HMPREF0864_00898 | (PF00328) | (mitochondrial) | |||
| 469613.HMPREF0864_00478 | + | ER | |||
| 469613.HMPREF0864_03545 | + | (mitochondrial) | |||
| 469613.HMPREF0864_03079 | (PF00577) | ER | |||
| 469613.HMPREF0864_00460 | + | ER | |||
| 469613.HMPREF0864_00396 | + | ER | |||
| 469613.HMPREF0864_01392 | PF03400 | ER | |||
| 469613.HMPREF0864_01388 | (PF03797) | ER | |||
| 469613.HMPREF0864_03064 | (PF00577) | (ER) | |||
| 469613.HMPREF0864_03062 | + | ER | |||
| 469613.HMPREF0864_02665 | + | ER | |||
| 469613.HMPREF0864_03397 | + | (mitochondrial); ER | |||
| 469613.HMPREF0864_03938 | + | ER | |||
| 469613.HMPREF0864_02284 | (PF00577) | ER | |||
| 469613.HMPREF0864_04007 | + | ER | |||
| 469613.HMPREF0864_01923 | + | ER | |||
| 469613.HMPREF0864_00873 | (PF03797) | ER | |||
| 469613.HMPREF0864_04110 | + | (ER) | |||
| 469613.HMPREF0864_03900 | + | mitochondrial | |||
| 469613.HMPREF0864_01469 | + | ER | |||
| 469613.HMPREF0864_02643 | + | ER | |||
| 469613.HMPREF0864_02354 | (PF00854) | ER | |||
| 469613.HMPREF0864_00934 | + | ER | |||
| 469613.HMPREF0864_00858 | + | ER | |||
| 469613.HMPREF0864_00777 | + | ER | |||
| 469613.HMPREF0864_00321 | + | ER | |||
| 469613.HMPREF0864_01983 | (PF05524) | (mitochondrial) | |||
| 469613.HMPREF0864_03969 | + | (ER); ER | |||
| 469613.HMPREF0864_01333 | (PF03797) | (ER) | |||
| 469613.HMPREF0864_00009 | + | ER | |||
| 469613.HMPREF0864_02080 | + | ER | |||
| 469613.HMPREF0864_02577 | + | ER | |||
| 469613.HMPREF0864_00127 | (PF00577) | (ER) | |||
| 469613.HMPREF0864_03653 | + | ER | |||
| 469613.HMPREF0864_01940 | (PF00577) | (mitochondrial) | |||
| 469613.HMPREF0864_01948 | (PF03797) | (mitochondrial) | |||
| 469613.HMPREF0864_02890 | + | (ER) | |||
| 469613.HMPREF0864_00804 | + | ER | |||
| 469613.HMPREF0864_00370 | (PF02112) | ER | |||
| 469613.HMPREF0864_01567 | + | (mitochondrial) | |||
| 469613.HMPREF0864_00960 | (PF00854) | (plastid) | |||
| 469613.HMPREF0864_02718 | (PF01276) (PF03711) | ||||
| 469613.HMPREF0864_03299 | + | (ER) | |||
| 469613.HMPREF0864_03503 | + | (mitochondrial) | |||
| 469613.HMPREF0864_03871 | (PF03797) | plastid | |||
| 469613.HMPREF0864_02647 | (PF01276) (PF03711) | ||||
| 469613.HMPREF0864_00039 | + | (plastid) | |||
| 469613.HMPREF0864_00284 | + | (mitochondrial) | |||
| 469613.HMPREF0864_04112 | (PF02357) | (plastid) | |||
| 469613.HMPREF0864_04051 | (PF05524) | (plastid) | |||
| 469613.HMPREF0864_02355 | (PF01276) (PF03711) | ||||
| 469613.HMPREF0864_00936 | (PF01276) (PF03711) | ||||
| 469613.HMPREF0864_00586 | + | (mitochondrial) | |||
| 469613.HMPREF0864_01196 | + | (mitochondrial) | |||
| 469613.HMPREF0864_03684 | (PF01276) (PF03711) | ||||
| 469613.HMPREF0864_02311 | PF03400 | ||||
| 469613.HMPREF0864_01789 | + | ||||
| 469613.HMPREF0864_00780 | + | ||||
| 469613.HMPREF0864_00784 | + | ||||
| 469613.HMPREF0864_00145 | (PF03797) | ||||
| 469613.HMPREF0864_03579 | + | ||||
| 469613.HMPREF0864_02304 | (PF03797) | not used | |||
| 469613.HMPREF0864_01960 | + | ||||
| 469613.HMPREF0864_02384 | + | ||||
| 469613.HMPREF0864_04106 | PF03400 | ||||
| 469613.HMPREF0864_03422 | + | ||||
| 469613.HMPREF0864_02444 | (PF13347) | ||||
| 469613.HMPREF0864_01513 | + | ||||
| 469613.HMPREF0864_00169 | + | ||||
| 469613.HMPREF0864_00181 | + | ||||
| 469613.HMPREF0864_00506 | + | ||||
| 469613.HMPREF0864_02213 | + | ||||
| 469613.HMPREF0864_03408 | + | ||||
| 469613.HMPREF0864_00983 | + | ||||
| 469613.HMPREF0864_02101 | (PF13347) | ||||
| 469613.HMPREF0864_01845 | + | ||||
| 469613.HMPREF0864_01352 | + | ||||
| 469613.HMPREF0864_01322 | + | ||||
| 469613.HMPREF0864_03476 | + | ||||
| 469613.HMPREF0864_02663 | (PF13347) | ||||
| 469613.HMPREF0864_01490 | + | ||||
| 469613.HMPREF0864_02484 | + | ||||
| 469613.HMPREF0864_02004 | (PF13347) | ||||
| 469613.HMPREF0864_02876 | + | ||||
| 469613.HMPREF0864_02712 | (PF05524) | ||||
| 469613.HMPREF0864_01726 | + | ||||
| 469613.HMPREF0864_04155 | PF03400 | ||||
| 469613.HMPREF0864_00251 | (PF16804) | ||||
| 469613.HMPREF0864_02874 | + | ||||
| 469613.HMPREF0864_01286 | (PF00854) | ||||
| 469613.HMPREF0864_01738 | PF03400 | ||||
| 469613.HMPREF0864_01739 | + | ||||
| 469613.HMPREF0864_00649 | (PF01228) | ||||
| 469613.HMPREF0864_04098 | (PF02357) | ||||
| 469613.HMPREF0864_00469 | (PF05524) | ||||
| 469613.HMPREF0864_02859 | + | ||||
| 469613.HMPREF0864_03282 | + | ||||
| 469613.HMPREF0864_03284 | + | ||||
| 469613.HMPREF0864_03604 | + | ||||
| 469613.HMPREF0864_00724 | + | ||||
| 469613.HMPREF0864_00272 | + | ||||
| 469613.HMPREF0864_03949 | + | ||||
| 469613.HMPREF0864_02380 | + | ||||
| 469613.HMPREF0864_03704 | (PF05524) | ||||
| 469613.HMPREF0864_03832 | + | ||||
| 469613.HMPREF0864_02039 | + | ||||
| 469613.HMPREF0864_01391 | (PF03797) | ||||
| 469613.HMPREF0864_00861 | (PF02357) | ||||
| 469613.HMPREF0864_01404 | (PF13347) | ||||
| 469613.HMPREF0864_04162 | PF03400 | ||||
| 469613.HMPREF0864_00281 | + | ||||
| 469613.HMPREF0864_03060 | PF12520 | ||||
| 469613.HMPREF0864_03710 | (PF13347) | ||||
| 469613.HMPREF0864_01095 | + | ||||
| 469613.HMPREF0864_03125 | (PF05524) | ||||
| 469613.HMPREF0864_02294 | (PF13347) | ||||
| 469613.HMPREF0864_02630 | + | ||||
| 469613.HMPREF0864_04114 | + | ||||
| 469613.HMPREF0864_00027 | + | ||||
| 469613.HMPREF0864_02349 | + | ||||
| 469613.HMPREF0864_03911 | (PF06176) | ||||
| 469613.HMPREF0864_03824 | + | ||||
| 469613.HMPREF0864_02515 | (PF00577) | ||||
| 469613.HMPREF0864_01678 | (PF04765) | ||||
| 469613.HMPREF0864_01217 | PF03400 | ||||
| 469613.HMPREF0864_01216 | PF03400 | not used | |||
| 469613.HMPREF0864_01520 | (PF01228) | ||||
| 469613.HMPREF0864_04134 | PF03400 | not used | |||
| 469613.HMPREF0864_03100 | + | ||||
| 469613.HMPREF0864_03690 | (PF01490) | ||||
| 469613.HMPREF0864_01208 | PF03400 | ||||
| 469613.HMPREF0864_01207 | PF03400 | ||||
| 469613.HMPREF0864_00625 | + | ||||
| 469613.HMPREF0864_01539 | (PF00854) | ||||
| 469613.HMPREF0864_04122 | + | ||||
| 469613.HMPREF0864_04120 | PF03400 | not used | |||
| 469613.HMPREF0864_02664 | (PF13347) | ||||
| 469613.HMPREF0864_03688 | (PF01228) | ||||
| 469613.HMPREF0864_02887 | (PF03797) | not used | |||
| 469613.HMPREF0864_01233 | + | ||||
| 469613.HMPREF0864_00634 | + | ||||
| 469613.HMPREF0864_04067 | (PF02357) | ||||
| 469613.HMPREF0864_01300 | PF03400 | not used | |||
| 469613.HMPREF0864_01316 | + | ||||
| 469613.HMPREF0864_00572 | + | ||||
| 469613.HMPREF0864_00206 | (PF01228) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.1 (1/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.5 (12/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.1 (1/10 KEGG proteins)
Estimated copy number = 1.5 (12/8 KEGG proteins)
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- +43 1 4277 876681
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