Metamenu

Effective results for Burkholderiales bacterium 1_1_47 (eggnog40)

Summary

Number of putative secreted proteins: 115
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 115 proteins (68 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469610.HMPREF0189_01938(PF14698) (PF00206)(mitochondrial)
469610.HMPREF0189_00997PF00890(ER)
469610.HMPREF0189_00570PF00890(mitochondrial)
469610.HMPREF0189_01643PF00890(ER)
469610.HMPREF0189_01642PF00890ER
469610.HMPREF0189_00211PF00890ER
469610.HMPREF0189_00502(PF00710)ER
469610.HMPREF0189_00698PF00890(mitochondrial); mitochondrial
469610.HMPREF0189_01787PF12974ER
469610.HMPREF0189_02309PF12974ER
469610.HMPREF0189_02307PF00890ER
469610.HMPREF0189_02099PF00890mitochondrial; (mitochondrial)
469610.HMPREF0189_02098PF00890ER
469610.HMPREF0189_02096PF12974ER
469610.HMPREF0189_00205PF00890(mitochondrial); mitochondrial
469610.HMPREF0189_00335PF00890ER
469610.HMPREF0189_02269PF00890(ER); ER
469610.HMPREF0189_02323PF12974ER
469610.HMPREF0189_02325PF00890ER
469610.HMPREF0189_01645PF12974mitochondrial; (mitochondrial)
469610.HMPREF0189_00648PF00890(ER)
469610.HMPREF0189_00931PF00890ER; (ER)
469610.HMPREF0189_00650PF12974mitochondrial
469610.HMPREF0189_01537PF00890mitochondrial
469610.HMPREF0189_01538PF00890(mitochondrial)
469610.HMPREF0189_02248PF00890ER
469610.HMPREF0189_02337(PF00710)mitochondrial; ER
469610.HMPREF0189_02310PF00890ER
469610.HMPREF0189_01025(PF00710)ER
469610.HMPREF0189_01023(PF03797)ER
469610.HMPREF0189_02186PF00890ER
469610.HMPREF0189_01521(PF03797)(ER)
469610.HMPREF0189_00669PF00890mitochondrial
469610.HMPREF0189_00242PF12974ER
469610.HMPREF0189_01734PF00890(mitochondrial)
469610.HMPREF0189_02196PF00890ER
469610.HMPREF0189_02199PF12974ER
469610.HMPREF0189_02165PF12974ER
469610.HMPREF0189_02167PF00890ER
469610.HMPREF0189_00873PF00890ER
469610.HMPREF0189_00872PF00890mitochondrial
469610.HMPREF0189_00875PF12974ER
469610.HMPREF0189_00723PF00890ER
469610.HMPREF0189_01542(PF00939)ER
469610.HMPREF0189_00599PF12974ER; mitochondrial
469610.HMPREF0189_00593(PF03797)ER
469610.HMPREF0189_00594(PF00939)ER
469610.HMPREF0189_02177PF00890ER
469610.HMPREF0189_02378(PF02643)ER
469610.HMPREF0189_00856PF00890ER
469610.HMPREF0189_00140PF00890ER
469610.HMPREF0189_00442(PF00939)ER
469610.HMPREF0189_00933PF12974(mitochondrial)
469610.HMPREF0189_01770PF00890ER
469610.HMPREF0189_01776PF00890ER
469610.HMPREF0189_00942PF00890ER
469610.HMPREF0189_00763PF12974(mitochondrial); plastid
469610.HMPREF0189_00772PF00890ER
469610.HMPREF0189_00967PF00890ER
469610.HMPREF0189_01748PF00890(mitochondrial)
469610.HMPREF0189_00358(PF00710)(mitochondrial)
469610.HMPREF0189_01303(PF14698) (PF00206)
469610.HMPREF0189_01653(PF03797)(mitochondrial)
469610.HMPREF0189_02302(PF02971) (PF07837)
469610.HMPREF0189_02316PF00890plastid
469610.HMPREF0189_01997PF00890(mitochondrial)
469610.HMPREF0189_00244PF00890(ER)
469610.HMPREF0189_00293(PF14698) (PF00206)
469610.HMPREF0189_02168PF00890(ER)
469610.HMPREF0189_01946(PF03797)(mitochondrial)
469610.HMPREF0189_00711(PF14698) (PF00206)
469610.HMPREF0189_01350PF00890(ER)
469610.HMPREF0189_01033(PF00206) (PF14698)
469610.HMPREF0189_02076(PF14698) (PF00206)
469610.HMPREF0189_00999(PF00206)
469610.HMPREF0189_01000(PF00206)not used
469610.HMPREF0189_01002(PF00206)
469610.HMPREF0189_02200PF00890
469610.HMPREF0189_00509(PF03797)
469610.HMPREF0189_01270PF00890
469610.HMPREF0189_01271(PF02643)
469610.HMPREF0189_02301(PF00206)
469610.HMPREF0189_01843(PF00939)
469610.HMPREF0189_00204PF12974
469610.HMPREF0189_00686(PF01958)
469610.HMPREF0189_00781(PF00710)
469610.HMPREF0189_02331(PF00710)
469610.HMPREF0189_00461(PF03797)
469610.HMPREF0189_00806PF00890
469610.HMPREF0189_00805PF00890
469610.HMPREF0189_01737PF00890
469610.HMPREF0189_02351(PF02643)
469610.HMPREF0189_00871(PF03797)
469610.HMPREF0189_00726PF12974
469610.HMPREF0189_00127(PF03797)
469610.HMPREF0189_01726PF00890
469610.HMPREF0189_02360(PF00206)not used
469610.HMPREF0189_02380(PF00206)not used
469610.HMPREF0189_00595(PF00206)
469610.HMPREF0189_00601PF00890
469610.HMPREF0189_00267(PF03797)
469610.HMPREF0189_02377(PF00206)not used
469610.HMPREF0189_01600(PF00939)
469610.HMPREF0189_01772PF12974
469610.HMPREF0189_01594PF00890
469610.HMPREF0189_00947(PF01137)
469610.HMPREF0189_00949(PF01137)
469610.HMPREF0189_00761PF00890
469610.HMPREF0189_00760PF00890
469610.HMPREF0189_00394(PF00206)
469610.HMPREF0189_01021(PF00206)
469610.HMPREF0189_02224(PF01958)
469610.HMPREF0189_01030(PF00206)
469610.HMPREF0189_01639(PF00710)
469610.HMPREF0189_01816PF00890

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================