Effective results for Fusobacterium nucleatum subsp. vincentii 4_1_13 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
469606.FSCG_01689				(PF13332)	ER
469606.FSCG_01570				(PF09820)	(mitochondrial)
469606.FSCG_01561				(PF03797)	ER
469606.FSCG_00999				(PF13155)	ER
469606.FSCG_01791				(PF09511)	mitochondrial; (mitochondrial)
469606.FSCG_01781				(PF13332)	ER
469606.FSCG_00283				(PF07837) (PF02971)
469606.FSCG_00885				(PF13155)
469606.FSCG_01682				(PF13332)
469606.FSCG_01906				(PF09820)
469606.FSCG_01907				(PF03797)
469606.FSCG_01116				(PF03797)
469606.FSCG_01572				(PF03797)
469606.FSCG_01814				(PF03797)
469606.FSCG_01815				(PF09820)
469606.FSCG_01560				(PF03797)	not used
469606.FSCG_01564				(PF09820)
469606.FSCG_01569				(PF09820)	not used
469606.FSCG_00993				(PF06414)
469606.FSCG_01392				(PF01991)
469606.FSCG_01833				(PF09820)
469606.FSCG_01767				(PF03797)
469606.FSCG_00813				(PF06176)
469606.FSCG_00037				(PF03054)
469606.FSCG_00030				(PF13155)
469606.FSCG_01864				(PF03054)
469606.FSCG_01463				(PF03797)
469606.FSCG_01462				(PF03797)	not used
469606.FSCG_01468				(PF12862)
469606.FSCG_00915				(PF03797)
469606.FSCG_00043				(PF03059)
469606.FSCG_01314				(PF13155)
469606.FSCG_01306				(PF06414)
469606.FSCG_01420				(PF03797)
469606.FSCG_02014				(PF09820)
469606.FSCG_01921				PF02987
469606.FSCG_00307				(PF03054)
469606.FSCG_01257				(PF09820)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================