Effective results for Citrobacter sp. 30_2 (eggnog40)

Summary

Number of putative secreted proteins: 735
- Predicted by EffectiveT3: 187 (high confidence), 307 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 21 before, 56 behind expected region 25..70aa
- Predicted by T4SEpre: 123
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 68 proteins (0 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
469595.CSAG_02066				(PF00384) (PF01568)	mitochondrial; (mitochondrial)
469595.CSAG_02067	+	(>)			(mitochondrial); (plastid)
469595.CSAG_00401				(PF00384) (PF01568)	ER
469595.CSAG_00326				(PF00384) (PF01568)	(mitochondrial)
469595.CSAG_00998				(PF00384) (PF01568)	(mitochondrial)
469595.CSAG_01482	+		+		ER
469595.CSAG_01133				(PF00384) (PF01568)	mitochondrial; (mitochondrial)
469595.CSAG_01372	+	(>)			(mitochondrial); plastid
469595.CSAG_01979			+		ER
469595.CSAG_02945				(PF01116)	(mitochondrial)
469595.CSAG_02671		(<)			(ER)
469595.CSAG_02454		+			ER
469595.CSAG_03615		(>)			ER
469595.CSAG_00768			+		ER
469595.CSAG_01095		(>)			ER
469595.CSAG_03828	+				(mitochondrial)
469595.CSAG_02688				(PF03222)	(ER)
469595.CSAG_01042		+			mitochondrial; (mitochondrial)
469595.CSAG_04067	+	+
469595.CSAG_04061			+		ER
469595.CSAG_01159		(>)			ER
469595.CSAG_04087		(>)			(mitochondrial)
469595.CSAG_00143				(PF05231)	ER
469595.CSAG_04333		(>)			mitochondrial
469595.CSAG_02820				(PF00939)	ER
469595.CSAG_02959				(PF03222)	(ER); ER
469595.CSAG_04432		(>)			(mitochondrial)
469595.CSAG_02493			+		(mitochondrial)
469595.CSAG_03206	+				(ER)
469595.CSAG_00154		(>)			ER
469595.CSAG_01338		(>)			mitochondrial; (mitochondrial)
469595.CSAG_01930				(PF05231)	ER; (ER)
469595.CSAG_01064			+		ER; (ER)
469595.CSAG_01111		(>)			(ER)
469595.CSAG_02039			+		(ER); ER
469595.CSAG_02038		+			ER
469595.CSAG_03810		(>)			ER
469595.CSAG_02801		(<)			(ER)
469595.CSAG_02808			+		mitochondrial
469595.CSAG_03775			+		ER
469595.CSAG_03226	+			(PF08125) (PF01232)
469595.CSAG_04561				(PF00939)	ER
469595.CSAG_04562	(+)			(PF00939)	ER
469595.CSAG_00532			+		ER
469595.CSAG_00538			+		ER
469595.CSAG_01866				(PF10662)	mitochondrial
469595.CSAG_00993			+		ER
469595.CSAG_02584			+		mitochondrial
469595.CSAG_03161		(<)			ER
469595.CSAG_03109			+		ER
469595.CSAG_01274			+		ER
469595.CSAG_01706		(>)			(mitochondrial); ER
469595.CSAG_02000		(>)			(mitochondrial)
469595.CSAG_02590			+		ER
469595.CSAG_04503			+		(mitochondrial)
469595.CSAG_01246			+		ER
469595.CSAG_01806	+				(ER)
469595.CSAG_04672			+		ER
469595.CSAG_02292	(+)			(PF05231)	ER
469595.CSAG_02431			+		ER
469595.CSAG_03418			+		ER
469595.CSAG_00670				(PF00384) (PF01568)	(mitochondrial)
469595.CSAG_00811		(>)			mitochondrial
469595.CSAG_01653		+			ER
469595.CSAG_02282			+		ER
469595.CSAG_03887				(PF05231)	ER
469595.CSAG_03398		(<)			(mitochondrial)
469595.CSAG_03065		+			(mitochondrial)
469595.CSAG_04011				(PF13391)	mitochondrial
469595.CSAG_03263			+		(mitochondrial)
469595.CSAG_02867			+		(mitochondrial); (plastid)
469595.CSAG_01756				(PF03222)	ER
469595.CSAG_02233		+			ER
469595.CSAG_03351		(<)			ER
469595.CSAG_03658		(>)			ER
469595.CSAG_03655			+		ER
469595.CSAG_03899		(>)			(mitochondrial)
469595.CSAG_03091		+			(mitochondrial)
469595.CSAG_01525		(<)			ER
469595.CSAG_03799	+				(ER)
469595.CSAG_03485		(>)			ER
469595.CSAG_03863			+		ER
469595.CSAG_04576			+		(mitochondrial)
469595.CSAG_04452		(>)			ER
469595.CSAG_00220			+		ER
469595.CSAG_01176		(>)			ER
469595.CSAG_00409				(PF00939)	ER
469595.CSAG_03678	+				(mitochondrial); (plastid)
469595.CSAG_04446				(PF00384)	(mitochondrial); mitochondrial
469595.CSAG_04445		(<)		(PF00384) (PF01568)
469595.CSAG_03506	+				mitochondrial
469595.CSAG_00587				(PF00939)	ER
469595.CSAG_00478		(>)			ER
469595.CSAG_01388			+		(mitochondrial); mitochondrial
469595.CSAG_00242		(>)			ER
469595.CSAG_01167		(>)			ER
469595.CSAG_02862				(PF00939)	ER
469595.CSAG_03848				(PF01116)	(mitochondrial)
469595.CSAG_03605			+		ER
469595.CSAG_03028		(>)			ER
469595.CSAG_04052		+			ER
469595.CSAG_01678		(>)			ER
469595.CSAG_01227	+				ER; (ER)
469595.CSAG_01156	(+)				ER
469595.CSAG_01151	+				(plastid)
469595.CSAG_01405	+				(ER)
469595.CSAG_01573				(PF00384) (PF01568)
469595.CSAG_02079	(+)				(ER)
469595.CSAG_03589	+				(ER)
469595.CSAG_04047	+				(mitochondrial)
469595.CSAG_01363				(PF00384) (PF01568)
469595.CSAG_01143	(+)				(ER)
469595.CSAG_01568				(PF00384) (PF01568)
469595.CSAG_01782	+	+
469595.CSAG_01780	+				plastid
469595.CSAG_01786	(+)				ER; (ER)
469595.CSAG_02840	(+)				mitochondrial; (mitochondrial)
469595.CSAG_03820	(+)				ER
469595.CSAG_02919			+		(mitochondrial)
469595.CSAG_04530				(PF00384) (PF01568)
469595.CSAG_00775	+				(plastid)
469595.CSAG_04339	+				(plastid)
469595.CSAG_01302				(PF08125) (PF01232)
469595.CSAG_03795	(+)			(PF08125) (PF01232)
469595.CSAG_00246	(+)				(mitochondrial); (ER)
469595.CSAG_03573	+	(>)
469595.CSAG_03158	(+)				(ER)
469595.CSAG_02375	(+)				ER
469595.CSAG_00553	(+)				ER
469595.CSAG_00558	+	+
469595.CSAG_01946	(+)		+		(plastid)
469595.CSAG_00330				(PF00384) (PF01568)
469595.CSAG_01233				(PF05683) (PF05681)
469595.CSAG_02036				(PF08125) (PF01232)
469595.CSAG_02032				(PF00384) (PF01568)
469595.CSAG_03149	(+)				(mitochondrial)
469595.CSAG_00521				(PF05034) (PF07476)
469595.CSAG_01695	+				plastid
469595.CSAG_03909	+				(mitochondrial)
469595.CSAG_03770		(<)
469595.CSAG_02796				(PF00384) (PF01568)
469595.CSAG_04186	+		+
469595.CSAG_01919	(+)				(mitochondrial)
469595.CSAG_01467	(+)				ER; (ER)
469595.CSAG_01485	+	(>)
469595.CSAG_02160	+				(mitochondrial)
469595.CSAG_04443	(+)				(mitochondrial)
469595.CSAG_01270				(PF00384) (PF01568)
469595.CSAG_01278				(PF08125) (PF01232)
469595.CSAG_00878	(+)				mitochondrial
469595.CSAG_01875				(PF00384) (PF01568)
469595.CSAG_03756				(PF00384) (PF01568)
469595.CSAG_02297	+				(mitochondrial)
469595.CSAG_00516				(PF05683) (PF05681)
469595.CSAG_04256	+		+
469595.CSAG_00351	(+)				(ER)
469595.CSAG_02337	+				(ER)
469595.CSAG_01731	+				plastid
469595.CSAG_02922	+			(PF03222)
469595.CSAG_03526			+		(mitochondrial)
469595.CSAG_03256				(PF08125) (PF01232)
469595.CSAG_04392	+		+
469595.CSAG_04150		+			(mitochondrial)
469595.CSAG_03009	+				plastid
469595.CSAG_01251		+			(ER)
469595.CSAG_03649			+		mitochondrial
469595.CSAG_02420		(>)	+
469595.CSAG_04490				(PF05683) (PF05681)
469595.CSAG_02125				(PF00384) (PF01568)
469595.CSAG_02257				(PF10662)	(mitochondrial)
469595.CSAG_01630	+				(plastid)
469595.CSAG_03661	(+)				ER
469595.CSAG_02626	(+)				(mitochondrial)
469595.CSAG_02402			+		(mitochondrial)
469595.CSAG_02714	(+)				(ER)
469595.CSAG_00824	+				(mitochondrial)
469595.CSAG_00354	(+)	+			(plastid)
469595.CSAG_01355				(PF00384) (PF01568)
469595.CSAG_01356				(PF00384)	(plastid)
469595.CSAG_02479		+			(mitochondrial)
469595.CSAG_04593				(PF01228)	(mitochondrial)
469595.CSAG_00039	(+)				ER
469595.CSAG_01189	+				(mitochondrial)
469595.CSAG_02860	+			(PF05681)
469595.CSAG_02868	+				(mitochondrial)
469595.CSAG_04050			+		(mitochondrial)
469595.CSAG_03938		(<)	+
469595.CSAG_01971	(+)				(mitochondrial)
469595.CSAG_01150		+
469595.CSAG_01578	+
469595.CSAG_01088	+
469595.CSAG_02981			+
469595.CSAG_00972	+
469595.CSAG_02235		(>)
469595.CSAG_01794			+
469595.CSAG_01797	(+)				(plastid)
469595.CSAG_01883			+
469595.CSAG_02182	+
469595.CSAG_02673	(+)		+
469595.CSAG_02677	(+)				(plastid)
469595.CSAG_02674	+
469595.CSAG_03850			+
469595.CSAG_02692			+
469595.CSAG_04046	+
469595.CSAG_04464	(+)				(plastid)
469595.CSAG_03875	(+)				plastid
469595.CSAG_03464		+
469595.CSAG_00005	+
469595.CSAG_04262	+
469595.CSAG_00569		+
469595.CSAG_04311	+
469595.CSAG_00168	+
469595.CSAG_01364		(<)
469595.CSAG_00413		(>)
469595.CSAG_02063			+
469595.CSAG_02202			+
469595.CSAG_02849	+
469595.CSAG_00647		+
469595.CSAG_02684	(+)		+
469595.CSAG_02441		+
469595.CSAG_02442	+
469595.CSAG_02443	+
469595.CSAG_03625	+
469595.CSAG_00344	+
469595.CSAG_02531			+
469595.CSAG_04071	+
469595.CSAG_04076			+
469595.CSAG_04521	+
469595.CSAG_04095			+
469595.CSAG_04099			+
469595.CSAG_04098			+
469595.CSAG_04242	+
469595.CSAG_00778	(+)		+
469595.CSAG_01319	(+)		+
469595.CSAG_00797	(+)				(ER)
469595.CSAG_01951	+
469595.CSAG_00400		(>)
469595.CSAG_02052	(+)				(ER)
469595.CSAG_02453	+
469595.CSAG_03108	+
469595.CSAG_04447	+				not used
469595.CSAG_03101	+
469595.CSAG_02303			+
469595.CSAG_04485	+
469595.CSAG_02941	+
469595.CSAG_02944	+
469595.CSAG_01174			+
469595.CSAG_04665	+
469595.CSAG_03016	+
469595.CSAG_03013	+
469595.CSAG_03495	(+)				(plastid)
469595.CSAG_04409		+
469595.CSAG_04532	+
469595.CSAG_04531				(PF00384)
469595.CSAG_00546	+
469595.CSAG_00350	+
469595.CSAG_04088			+
469595.CSAG_00090		(<)
469595.CSAG_00062	+
469595.CSAG_01124	+
469595.CSAG_00324		(>)
469595.CSAG_00898			+
469595.CSAG_01543	+
469595.CSAG_01053	(+)				(plastid)
469595.CSAG_03323	+
469595.CSAG_03975				(PF13391)
469595.CSAG_04436	(+)		+
469595.CSAG_04001			+
469595.CSAG_00393	+
469595.CSAG_03203		(>)
469595.CSAG_02376				(PF01228)
469595.CSAG_00086	+
469595.CSAG_00084	+
469595.CSAG_00150		+
469595.CSAG_00153	(+)				(plastid)
469595.CSAG_04059	+
469595.CSAG_00555	+
469595.CSAG_00420			+
469595.CSAG_00321		(<)			not used
469595.CSAG_01069	+
469595.CSAG_01114		+
469595.CSAG_01232	(+)	(<)
469595.CSAG_02811	+
469595.CSAG_03818			+
469595.CSAG_02814		(>)
469595.CSAG_03812				(PF06176)
469595.CSAG_02967		(<)
469595.CSAG_02769	+
469595.CSAG_03211		+
469595.CSAG_03218				(PF03222)
469595.CSAG_04517	(+)		+
469595.CSAG_04356			+
469595.CSAG_03639	+
469595.CSAG_00634	+
469595.CSAG_00188	+
469595.CSAG_00527		(<)
469595.CSAG_03051	+
469595.CSAG_00957		(>)
469595.CSAG_04189	+
469595.CSAG_00857	+
469595.CSAG_01102		+
469595.CSAG_04033	(+)				(ER)
469595.CSAG_02638	+
469595.CSAG_03774			+
469595.CSAG_02791				(PF13391)
469595.CSAG_02793	+
469595.CSAG_02047			+
469595.CSAG_03177	+
469595.CSAG_03991		(<)
469595.CSAG_03996	+
469595.CSAG_04185	+
469595.CSAG_04363	+
469595.CSAG_04163	(+)				plastid
469595.CSAG_04162	+
469595.CSAG_02572	+
469595.CSAG_01669	+
469595.CSAG_00847	+
469595.CSAG_01863		(>)
469595.CSAG_01860	(+)				(plastid)
469595.CSAG_00996	+
469595.CSAG_02165	+
469595.CSAG_02011	+
469595.CSAG_01567		(<)
469595.CSAG_02747	+
469595.CSAG_02743				(PF01116)
469595.CSAG_04623		(>)
469595.CSAG_02581				(PF05231)
469595.CSAG_02587	+
469595.CSAG_04195	+
469595.CSAG_02977	+
469595.CSAG_01180	+
469595.CSAG_04282	+
469595.CSAG_04289			+
469595.CSAG_00974	+
469595.CSAG_01649	+
469595.CSAG_04201	(+)				(plastid)
469595.CSAG_00614				(PF01228)
469595.CSAG_00500	+
469595.CSAG_00507			+
469595.CSAG_00504			+
469595.CSAG_00271			+
469595.CSAG_01909		(>)
469595.CSAG_00872	+
469595.CSAG_00879	+
469595.CSAG_01877	(+)				(ER)
469595.CSAG_01015	+
469595.CSAG_00470			+
469595.CSAG_01475	+
469595.CSAG_00479	(+)				(mitochondrial); not used
469595.CSAG_01707	(+)				(plastid)
469595.CSAG_02002	+
469595.CSAG_02568	+
469595.CSAG_03758	(+)	(>)
469595.CSAG_03247	(+)				(plastid)
469595.CSAG_04540		(<)
469595.CSAG_04384			+
469595.CSAG_04502	+
469595.CSAG_00519				(PF14330)
469595.CSAG_02952	(+)				(mitochondrial)
469595.CSAG_00265			+
469595.CSAG_00867		(>)
469595.CSAG_00461	+
469595.CSAG_01737			+
469595.CSAG_03116	+
469595.CSAG_01026				(PF01116)
469595.CSAG_00067	+
469595.CSAG_02880	+
469595.CSAG_02709			+
469595.CSAG_02101			+
469595.CSAG_02920				(PF01228)
469595.CSAG_02927	(+)				(mitochondrial)
469595.CSAG_04609	+
469595.CSAG_04607		(>)
469595.CSAG_03742	+
469595.CSAG_03746	+
469595.CSAG_03749	+
469595.CSAG_02437		+
469595.CSAG_00995	+
469595.CSAG_03253	+
469595.CSAG_04550			+
469595.CSAG_03002	+
469595.CSAG_04158	+
469595.CSAG_04078	(+)		+
469595.CSAG_00075	+
469595.CSAG_04341			+
469595.CSAG_00678				(PF01228)
469595.CSAG_00387		+
469595.CSAG_01250	+
469595.CSAG_00819	+
469595.CSAG_00817	+
469595.CSAG_00813	+
469595.CSAG_00010	+
469595.CSAG_01768	+
469595.CSAG_02609	+
469595.CSAG_00725	+
469595.CSAG_03882	+
469595.CSAG_03733	+
469595.CSAG_03392	+
469595.CSAG_04121			+
469595.CSAG_01683	+
469595.CSAG_03844	+
469595.CSAG_00716			+
469595.CSAG_00662	+
469595.CSAG_01297	+
469595.CSAG_01829		(>)
469595.CSAG_00482		(>)
469595.CSAG_02631	+
469595.CSAG_03722		(>)
469595.CSAG_03893	+
469595.CSAG_03474	+
469595.CSAG_03077	+
469595.CSAG_04006			+
469595.CSAG_03272	+
469595.CSAG_01442	+
469595.CSAG_01354	+
469595.CSAG_04227	+
469595.CSAG_00235	+
469595.CSAG_00123	+
469595.CSAG_00831			+
469595.CSAG_01637		(<)
469595.CSAG_03348	+
469595.CSAG_01744	+
469595.CSAG_03860		(>)
469595.CSAG_00465			+
469595.CSAG_02400	(+)	+
469595.CSAG_04727			+
469595.CSAG_01385	+
469595.CSAG_04039			+
469595.CSAG_04035		+
469595.CSAG_04587	+
469595.CSAG_03285		+
469595.CSAG_04284	+
469595.CSAG_02970			+
469595.CSAG_04450				(PF01116)
469595.CSAG_04106		(>)
469595.CSAG_04572	+
469595.CSAG_00389	(+)				(mitochondrial)
469595.CSAG_02716	+				not used
469595.CSAG_00131		(>)
469595.CSAG_00134	+
469595.CSAG_00825	+
469595.CSAG_00820	+
469595.CSAG_02891	+
469595.CSAG_03057	+
469595.CSAG_02398		(>)
469595.CSAG_04345	+
469595.CSAG_02366		(>)
469595.CSAG_01142	+
469595.CSAG_01635			+
469595.CSAG_02563	+
469595.CSAG_04343	(+)				(plastid)
469595.CSAG_04023	+
469595.CSAG_04279	(+)		+
469595.CSAG_04111			+
469595.CSAG_03318	+
469595.CSAG_03040			+
469595.CSAG_00036			+
469595.CSAG_00035		(>)
469595.CSAG_00034		(>)
469595.CSAG_04271		(>)
469595.CSAG_00360	+
469595.CSAG_01618		(<)
469595.CSAG_01188			+
469595.CSAG_02884	+
469595.CSAG_00962	+
469595.CSAG_00053	+
469595.CSAG_04617		+
469595.CSAG_02080	(+)		+
469595.CSAG_00057			+
469595.CSAG_03910		+
469595.CSAG_04330	+
469595.CSAG_02861				(PF05683)
469595.CSAG_02643	+
469595.CSAG_03847				(PF01116)
469595.CSAG_02469	+
469595.CSAG_03600			+
469595.CSAG_02511	+
469595.CSAG_02515	(+)	(>)
469595.CSAG_03025	+
469595.CSAG_04051	+
469595.CSAG_03334			+
469595.CSAG_01520	+
469595.CSAG_00195		(>)
469595.CSAG_01373	+
469595.CSAG_00116		(<)
469595.CSAG_00688	(+)	+
469595.CSAG_00378	+
469595.CSAG_00218	+
469595.CSAG_03331		+
469595.CSAG_01974	(+)
469595.CSAG_01575	(+)
469595.CSAG_02230	(+)
469595.CSAG_02077	(+)
469595.CSAG_01792	(+)
469595.CSAG_01882	(+)
469595.CSAG_02185	(+)
469595.CSAG_02852	(+)
469595.CSAG_03853	(+)
469595.CSAG_03856	(+)
469595.CSAG_02457	(+)
469595.CSAG_01476	(+)
469595.CSAG_04045	(+)
469595.CSAG_04048	(+)
469595.CSAG_03929	(+)
469595.CSAG_03927	(+)
469595.CSAG_00007	(+)
469595.CSAG_04269	(+)
469595.CSAG_04265	(+)
469595.CSAG_04260	(+)
469595.CSAG_00564	(+)
469595.CSAG_00304	(+)
469595.CSAG_01368	(+)
469595.CSAG_00784	(+)
469595.CSAG_00187	(+)
469595.CSAG_01563	(+)
469595.CSAG_01569	(+)
469595.CSAG_01092	(+)
469595.CSAG_01098	(+)
469595.CSAG_02996	(+)
469595.CSAG_02194	(+)
469595.CSAG_02842	(+)
469595.CSAG_04677	(+)
469595.CSAG_03559	(+)
469595.CSAG_04529	(+)
469595.CSAG_01923	(+)
469595.CSAG_02367	(+)
469595.CSAG_00570	(+)
469595.CSAG_01950	(+)
469595.CSAG_00951	(+)
469595.CSAG_01426	(+)
469595.CSAG_02832	(+)
469595.CSAG_03834	(+)
469595.CSAG_01582	(+)
469595.CSAG_02653	(+)
469595.CSAG_02948	(+)
469595.CSAG_03543	(+)
469595.CSAG_03125	(+)
469595.CSAG_03943	(+)
469595.CSAG_04084	(+)
469595.CSAG_00097	(+)
469595.CSAG_00544	(+)
469595.CSAG_02159	(+)
469595.CSAG_01772	(+)
469595.CSAG_00751	(+)
469595.CSAG_03804	(+)
469595.CSAG_02228	(+)
469595.CSAG_02629	(+)
469595.CSAG_00085	(+)
469595.CSAG_02873	(+)
469595.CSAG_00552	(+)
469595.CSAG_00884	(+)
469595.CSAG_01597	(+)
469595.CSAG_01598	(+)
469595.CSAG_04308	(+)				not used
469595.CSAG_03781	(+)
469595.CSAG_02496	(+)
469595.CSAG_02966	(+)
469595.CSAG_02963	(+)
469595.CSAG_02782	(+)
469595.CSAG_00891	(+)
469595.CSAG_00890	(+)
469595.CSAG_03966	(+)
469595.CSAG_03962	(+)
469595.CSAG_03367	(+)
469595.CSAG_04422	(+)
469595.CSAG_04515	(+)
469595.CSAG_04358	(+)
469595.CSAG_04351	(+)
469595.CSAG_01323	(+)
469595.CSAG_01213	(+)
469595.CSAG_00856	(+)
469595.CSAG_01079	(+)				not used
469595.CSAG_01077	(+)
469595.CSAG_01101	(+)
469595.CSAG_01103	(+)
469595.CSAG_01458	(+)
469595.CSAG_02029	(+)
469595.CSAG_02379	(+)
469595.CSAG_02797	(+)
469595.CSAG_02776	(+)
469595.CSAG_03681	(+)
469595.CSAG_04633	(+)
469595.CSAG_03995	(+)
469595.CSAG_01643	(+)
469595.CSAG_00707	(+)
469595.CSAG_04292	(+)
469595.CSAG_04366	(+)
469595.CSAG_00537	(+)
469595.CSAG_00443	(+)
469595.CSAG_00846	(+)
469595.CSAG_01007	(+)
469595.CSAG_00412	(+)
469595.CSAG_00944	(+)
469595.CSAG_02482	(+)
469595.CSAG_03693	(+)
469595.CSAG_02341	(+)
469595.CSAG_02340	(+)
469595.CSAG_04194	(+)
469595.CSAG_04578	(+)
469595.CSAG_03232	(+)
469595.CSAG_04374	(+)
469595.CSAG_04178	(+)
469595.CSAG_00610	(+)
469595.CSAG_00503	(+)
469595.CSAG_00293	(+)
469595.CSAG_00291	(+)
469595.CSAG_01277	(+)
469595.CSAG_01874	(+)
469595.CSAG_00473	(+)
469595.CSAG_03726	(+)
469595.CSAG_02914	(+)
469595.CSAG_02755	(+)
469595.CSAG_02757	(+)
469595.CSAG_02591	(+)
469595.CSAG_02594	(+)
469595.CSAG_00663	(+)
469595.CSAG_03403	(+)
469595.CSAG_02890	(+)
469595.CSAG_03720	(+)
469595.CSAG_03241	(+)
469595.CSAG_04541	(+)
469595.CSAG_04549	(+)
469595.CSAG_00170	(+)
469595.CSAG_04380	(+)
469595.CSAG_01826	(+)
469595.CSAG_02924	(+)
469595.CSAG_01610	(+)
469595.CSAG_00263	(+)
469595.CSAG_02444	(+)
469595.CSAG_01240	(+)
469595.CSAG_02611	(+)
469595.CSAG_02610	(+)
469595.CSAG_02729	(+)
469595.CSAG_02728	(+)
469595.CSAG_02723	(+)
469595.CSAG_03741	(+)
469595.CSAG_02434	(+)
469595.CSAG_03524	(+)
469595.CSAG_01692	(+)
469595.CSAG_03254	(+)
469595.CSAG_02536	(+)
469595.CSAG_04159	(+)
469595.CSAG_04153	(+)
469595.CSAG_00074	(+)
469595.CSAG_00070	(+)
469595.CSAG_00046	(+)
469595.CSAG_00677	(+)
469595.CSAG_01256	(+)
469595.CSAG_01650	(+)
469595.CSAG_03001	(+)
469595.CSAG_01721	(+)
469595.CSAG_02946	(+)
469595.CSAG_03646	(+)
469595.CSAG_00557	(+)
469595.CSAG_02427	(+)
469595.CSAG_04700	(+)
469595.CSAG_03399	(+)
469595.CSAG_03088	(+)
469595.CSAG_03067	(+)
469595.CSAG_03066	(+)
469595.CSAG_03262	(+)
469595.CSAG_03269	(+)
469595.CSAG_04252	(+)
469595.CSAG_00346	(+)
469595.CSAG_00392	(+)
469595.CSAG_01282	(+)
469595.CSAG_01280	(+)
469595.CSAG_01531	(+)
469595.CSAG_00483	(+)
469595.CSAG_00481	(+)
469595.CSAG_00933	(+)
469595.CSAG_02128	(+)
469595.CSAG_04627	(+)
469595.CSAG_02521	(+)
469595.CSAG_04717	(+)
469595.CSAG_01846	(+)
469595.CSAG_03093	(+)
469595.CSAG_04134	(+)
469595.CSAG_04692	(+)
469595.CSAG_04699	(+)
469595.CSAG_01292	(+)
469595.CSAG_02247	(+)
469595.CSAG_03719	(+)
469595.CSAG_03861	(+)
469595.CSAG_03862	(+)
469595.CSAG_04723	(+)
469595.CSAG_02236	(+)
469595.CSAG_04470	(+)
469595.CSAG_04032	(+)
469595.CSAG_03288	(+)
469595.CSAG_04586	(+)
469595.CSAG_04582	(+)
469595.CSAG_04104	(+)
469595.CSAG_02518	(+)
469595.CSAG_04575	(+)
469595.CSAG_00388	(+)
469595.CSAG_00008	(+)
469595.CSAG_00224	(+)
469595.CSAG_00139	(+)
469595.CSAG_01262	(+)
469595.CSAG_00130	(+)
469595.CSAG_00135	(+)
469595.CSAG_00128	(+)
469595.CSAG_01994	(+)
469595.CSAG_02364	(+)
469595.CSAG_02094	(+)
469595.CSAG_01551	(+)
469595.CSAG_02877	(+)
469595.CSAG_02564	(+)
469595.CSAG_04024	(+)
469595.CSAG_04026	(+)
469595.CSAG_04270	(+)				not used
469595.CSAG_04208	(+)
469595.CSAG_04209	(+)
469595.CSAG_00583	(+)
469595.CSAG_00102	(+)
469595.CSAG_01619	(+)
469595.CSAG_02888	(+)
469595.CSAG_01981	(+)
469595.CSAG_01163	(+)
469595.CSAG_00243	(+)
469595.CSAG_01603	(+)
469595.CSAG_01134	(+)
469595.CSAG_00186	(+)
469595.CSAG_02466	(+)
469595.CSAG_02467	(+)
469595.CSAG_03939	(+)
469595.CSAG_00029	(+)
469595.CSAG_00592	(+)
469595.CSAG_00598	(+)
469595.CSAG_00110	(+)
469595.CSAG_00113	(+)
469595.CSAG_00117	(+)
469595.CSAG_00683	(+)
469595.CSAG_00376	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.3 (3/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================