Effective results for Thermobispora bispora DSM 43833 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
469371.Tbis_0352				(PF00553)	mitochondrial; (mitochondrial)
469371.Tbis_2862				(PF00553)	ER
469371.Tbis_2664				(PF01406)	(mitochondrial)
469371.Tbis_2656				(PF00553)	mitochondrial
469371.Tbis_2830				(PF00553)	mitochondrial; ER
469371.Tbis_1040				(PF00553)	ER
469371.Tbis_2139				(PF00553)	ER
469371.Tbis_1932				(PF01406)	mitochondrial
469371.Tbis_2022				(PF00553)	mitochondrial
469371.Tbis_0925				(PF00553)	ER
469371.Tbis_1559				(PF00553)	mitochondrial; (mitochondrial)
469371.Tbis_0780				(PF00553)	ER
469371.Tbis_1219				(PF00553)	ER
469371.Tbis_2633				(PF00553)	ER
469371.Tbis_2444				(PF06241)	mitochondrial
469371.Tbis_0388				(PF00553)	ER
469371.Tbis_2616				(PF13580)	mitochondrial
469371.Tbis_3491				(PF02182)
469371.Tbis_2640				(PF13580)
469371.Tbis_0430				(PF06032)
469371.Tbis_0423				(PF01951)
469371.Tbis_0429				(PF06032)
469371.Tbis_0428				(PF06032)
469371.Tbis_2138				(PF00553)
469371.Tbis_2913				(PF00102)
469371.Tbis_3171				(PF01406)
469371.Tbis_0506				(PF01406)
469371.Tbis_2774				(PF00553)
469371.Tbis_2950				(PF06032)
469371.Tbis_0834				(PF01951)
469371.Tbis_1540				(PF11977)
469371.Tbis_3233				(PF13580)
469371.Tbis_1579				PF14447
469371.Tbis_1663				(PF13580)
469371.Tbis_2617				(PF13580)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================