Metamenu

Effective results for Macrococcus caseolyticus JCSC5402 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 16 proteins (1 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
458233.MCCL_1658(PF08378)mitochondrial; (mitochondrial)
458233.MCCL_0506(PF05257)ER
458233.MCCL_1811(PF05257)mitochondrial; (mitochondrial)
458233.MCCL_1497(PF08378)ER
458233.MCCL_0055(PF05257)ER
458233.MCCL_0904PF02037(ER)
458233.MCCL_0476(PF06941)
458233.MCCL_1323(PF14792)
458233.MCCL_0268(PF08378)
458233.MCCL_1511(PF05257)
458233.MCCL_1203(PF06941)
458233.MCCL_1785(PF03630)
458233.MCCL_1578(PF08378)
458233.MCCL_0389(PF08378)
458233.MCCL_1155(PF08123)
458233.MCCL_0685(PF08378)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================