Effective results for Streptomyces albus J1074 (eggnog40)

Summary

Number of putative secreted proteins: 53
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 53 proteins (3 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
457425.SSHG_05692				(PF01094)	(ER); ER
457425.SSHG_02731				(PF01839)	ER
457425.SSHG_01696				(PF08530)	ER
457425.SSHG_01986				(PF13535)	ER
457425.SSHG_00897				(PF12862)	mitochondrial; (mitochondrial)
457425.SSHG_05486				(PF08530)	(ER)
457425.SSHG_03731				(PF09683)	ER
457425.SSHG_01645				(PF07555)	ER
457425.SSHG_03315				(PF14684)	ER
457425.SSHG_03279				(PF07224)	(ER); (plastid)
457425.SSHG_03621				(PF00648)	(mitochondrial)
457425.SSHG_02833				(PF10138)	(mitochondrial); (plastid)
457425.SSHG_02815				(PF01839)	(mitochondrial)
457425.SSHG_02818				(PF01839)	(mitochondrial)
457425.SSHG_04506				(PF07646)	(mitochondrial)
457425.SSHG_03413				(PF13535)	(ER)
457425.SSHG_02046				(PF01839)	(mitochondrial)
457425.SSHG_03259				(PF08530)	(plastid)
457425.SSHG_05426				(PF08530)	(plastid)
457425.SSHG_00218				(PF01756)
457425.SSHG_04892				(PF06999)
457425.SSHG_02737				(PF03301)
457425.SSHG_05058				(PF08530)
457425.SSHG_05059				(PF13535)
457425.SSHG_01828				(PF10138)
457425.SSHG_05076				PF04882
457425.SSHG_01779				(PF13535)
457425.SSHG_01985				(PF13535)
457425.SSHG_00179				(PF08530)
457425.SSHG_05602				(PF01197)
457425.SSHG_02408				PF08213	not used
457425.SSHG_03844				(PF07555)
457425.SSHG_03826				(PF14684)
457425.SSHG_04451				(PF01197)
457425.SSHG_04452				(PF03462)
457425.SSHG_04558				(PF13816)
457425.SSHG_00258				(PF10138)
457425.SSHG_02726				PF16850
457425.SSHG_02138				(PF09445)
457425.SSHG_02279				(PF08530)
457425.SSHG_01501				(PF03301)
457425.SSHG_00195				(PF06999)
457425.SSHG_04065				(PF03462)
457425.SSHG_02817				(PF01839)
457425.SSHG_01549				(PF14684)
457425.SSHG_03503				(PF01839)
457425.SSHG_01492				(PF13535)
457425.SSHG_00253				(PF01197)
457425.SSHG_00068				(PF03301)
457425.SSHG_03581				(PF01756)
457425.SSHG_04446				(PF03462)
457425.SSHG_04447				(PF03462)
457425.SSHG_04448				(PF01197)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================