Effective results for Arthrobacter chlorophenolicus A6 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
452863.Achl_3821				(PF00544)	(ER); (mitochondrial)
452863.Achl_0340				(PF12158)	ER
452863.Achl_2956				(PF02156)	ER
452863.Achl_0508				(PF06993)	ER
452863.Achl_2764				(PF06993)	ER
452863.Achl_0980				(PF02156)	ER
452863.Achl_2908				PF06645	ER
452863.Achl_0440				(PF02595)	(mitochondrial)
452863.Achl_0495				(PF00544)	ER
452863.Achl_0496				(PF00544)	ER
452863.Achl_1020				(PF06993)	ER
452863.Achl_1032				(PF12158)	(ER)
452863.Achl_2075				(PF12900)
452863.Achl_2085				(PF12900)
452863.Achl_2084				(PF12900)
452863.Achl_0239				(PF02595)
452863.Achl_3638				(PF12900)
452863.Achl_1178				(PF00544)
452863.Achl_1885				(PF12900)
452863.Achl_0154				(PF02156)
452863.Achl_3379				(PF12900)
452863.Achl_0438				(PF02156)
452863.Achl_0982				(PF12900)
452863.Achl_0194				(PF02595)
452863.Achl_0196				(PF04961)
452863.Achl_3439				(PF02595)
452863.Achl_2910				(PF14885)
452863.Achl_0014				(PF00643)
452863.Achl_1735				(PF12158)
452863.Achl_3464				(PF04961)
452863.Achl_3110				(PF09224)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================