Metamenu

Effective results for Phenylobacterium zucineum HLK1 (eggnog40)

Summary

Number of putative secreted proteins: 71
- Predicted by T4SEpre: 56
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 22 proteins (0 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
450851.PHZ_c0920+ER
450851.PHZ_c2490+ER
450851.PHZ_c1663+mitochondrial
450851.PHZ_c1296+ER
450851.PHZ_c1843+mitochondrial
450851.PHZ_c0713(PF05960)ER
450851.PHZ_c3194+ER
450851.PHZ_c1887(PF05960)ER
450851.PHZ_c2115(PF05960)(ER)
450851.PHZ_c0940(PF05960)mitochondrial; (mitochondrial)
450851.PHZ_c0941(PF05960)ER
450851.PHZ_c0942(PF05960)mitochondrial; (mitochondrial)
450851.PHZ_c0659+ER
450851.PHZ_c1300+(mitochondrial)
450851.PHZ_c0228+ER
450851.PHZ_c1571(PF00050)ER
450851.PHZ_c1204+ER
450851.PHZ_c2573(PF13759)(ER)
450851.PHZ_c1363+ER
450851.PHZ_c2099+(mitochondrial); plastid
450851.PHZ_c3307(PF05960)ER
450851.PHZ_c0654+ER
450851.PHZ_c1772+ER
450851.PHZ_c1223+(ER)
450851.PHZ_c2887(PF05960)ER
450851.PHZ_c2626(PF05960)ER
450851.PHZ_c1536+mitochondrial; (mitochondrial)
450851.PHZ_c0791+(mitochondrial)
450851.PHZ_c3247+(ER)
450851.PHZ_c1253+
450851.PHZ_c3018(PF01786)
450851.PHZ_c3498+
450851.PHZ_c1645+
450851.PHZ_c2283+
450851.PHZ_c3395+
450851.PHZ_c0389+
450851.PHZ_c0383+
450851.PHZ_c2383(PF02201)
450851.PHZ_c2949+
450851.PHZ_c1169+
450851.PHZ_c2064(PF02201)
450851.PHZ_c2393(PF13683)
450851.PHZ_c0090+
450851.PHZ_c1986+
450851.PHZ_c1842+
450851.PHZ_c2730(PF13759)
450851.PHZ_c0187+
450851.PHZ_c2360+
450851.PHZ_c2368(PF13683)
450851.PHZ_c3167+
450851.PHZ_c0338+
450851.PHZ_c1958+
450851.PHZ_c0949+
450851.PHZ_c1490(PF13683)
450851.PHZ_c2321+
450851.PHZ_c1157+
450851.PHZ_c0236+
450851.PHZ_c2170(PF13683)
450851.PHZ_c3227+
450851.PHZ_c1819+
450851.PHZ_c0764+
450851.PHZ_c0978(PF13683)
450851.PHZ_c0977(PF13683)
450851.PHZ_c1779+
450851.PHZ_c3205+
450851.PHZ_c2421(PF13683)
450851.PHZ_c2781+
450851.PHZ_c2187+
450851.PHZ_c0359+
450851.PHZ_c2531+
450851.PHZ_c0254+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================