Effective results for Cellulomonas flavigena DSM 20109 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 61 proteins (16 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
446466.Cfla_0905				PF00331 (PF02018) (PF00553)	ER
446466.Cfla_1515				(PF00759) (PF02018) (PF07679)	mitochondrial
446466.Cfla_3024				PF00331 (PF00553) (PF03664)	ER
446466.Cfla_2024				PF00331 (PF00553)	ER
446466.Cfla_2848				(PF04886) (PF03664)	mitochondrial
446466.Cfla_0016				(PF00759) (PF00553)	mitochondrial; (ER)
446466.Cfla_3563				(PF00759) (PF00553)	ER
446466.Cfla_3031				(PF00759) (PF02018)	(mitochondrial); (ER)
446466.Cfla_0139				(PF00759) (PF00553)	(ER)
446466.Cfla_3558				PF00331 (PF00553)	mitochondrial
446466.Cfla_0638				PF00331 (PF02018)	ER; (ER)
446466.Cfla_0639				PF00331 (PF02018)	ER
446466.Cfla_0245				PF00331 (PF00457)	ER
446466.Cfla_3531				PF00331 (PF00553)	(ER)
446466.Cfla_0376				PF00331	ER; (ER)
446466.Cfla_0179				(PF00553)	mitochondrial
446466.Cfla_0175				(PF00553)	ER
446466.Cfla_0172				(PF00553)	mitochondrial
446466.Cfla_2913				(PF00553)	mitochondrial
446466.Cfla_1572				(PF00553)	ER
446466.Cfla_2327				PF00331	(mitochondrial)
446466.Cfla_3120				(PF00553)	ER; mitochondrial
446466.Cfla_0338				(PF00553)	mitochondrial; (mitochondrial)
446466.Cfla_0246				(PF00457)	(mitochondrial); (ER)
446466.Cfla_0242				(PF00553)	ER
446466.Cfla_0490				(PF00553)	ER
446466.Cfla_2509				(PF00553)	ER
446466.Cfla_3105				(PF00553)	ER; mitochondrial
446466.Cfla_0316				(PF00553)	mitochondrial
446466.Cfla_1429				(PF00553)	ER
446466.Cfla_3169				(PF00553)	ER
446466.Cfla_3168				(PF00553)	ER
446466.Cfla_3152				(PF03639)	ER
446466.Cfla_1897				(PF00553)	mitochondrial; (ER)
446466.Cfla_2811				(PF00553)	ER
446466.Cfla_1173				(PF09683)	(mitochondrial)
446466.Cfla_3043				(PF00553)	mitochondrial
446466.Cfla_2237				(PF01453)	ER
446466.Cfla_1029				(PF00553)	ER
446466.Cfla_2487				PF00331	(ER)
446466.Cfla_2139				(PF01453)	ER
446466.Cfla_0244				(PF00457)	(mitochondrial)
446466.Cfla_1229				(PF02182) (PF13391)
446466.Cfla_3547				PF00331	(ER)
446466.Cfla_3244				(PF07679)
446466.Cfla_1332				(PF03639)
446466.Cfla_2912				(PF00553)
446466.Cfla_2048				PF00331
446466.Cfla_0035				(PF03726)
446466.Cfla_1310				(PF00553)
446466.Cfla_0809				PF00331
446466.Cfla_1307				(PF00553)
446466.Cfla_1518				(PF03726)
446466.Cfla_0457				(PF01443)
446466.Cfla_2743				PF08213	not used
446466.Cfla_0449				PF07460
446466.Cfla_1896				(PF00553)
446466.Cfla_1575				(PF01443)
446466.Cfla_3262				(PF13391)
446466.Cfla_3293				(PF11977)
446466.Cfla_3271				(PF13391)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================