Metamenu

Effective results for Collinsella stercoris DSM 13279 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 61 proteins (0 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
445975.COLSTE_00166(PF00232)(ER)
445975.COLSTE_00010(PF07555)mitochondrial
445975.COLSTE_01005(PF07555)ER
445975.COLSTE_02580(PF12762)(mitochondrial)
445975.COLSTE_00234(PF13173)mitochondrial
445975.COLSTE_00157(PF13173)(mitochondrial)
445975.COLSTE_01358(PF00232)(mitochondrial)
445975.COLSTE_01166(PF00232)(plastid)
445975.COLSTE_00471(PF13173)(mitochondrial)
445975.COLSTE_00219(PF00232)(ER)
445975.COLSTE_02539(PF01695)
445975.COLSTE_00168(PF00232)
445975.COLSTE_00901(PF00731)
445975.COLSTE_01162(PF00232)
445975.COLSTE_01184(PF13173)
445975.COLSTE_01754(PF01695)not used
445975.COLSTE_01753(PF01695)
445975.COLSTE_00175(PF13204)
445975.COLSTE_00758(PF00232)
445975.COLSTE_00351(PF13173)
445975.COLSTE_00446(PF01695)
445975.COLSTE_02281(PF04326)
445975.COLSTE_01749(PF01695)
445975.COLSTE_01059(PF01695)not used
445975.COLSTE_00283(PF00232)
445975.COLSTE_01880(PF00232)
445975.COLSTE_01065(PF00232)
445975.COLSTE_02232(PF00731)
445975.COLSTE_02342(PF04326)
445975.COLSTE_00408(PF01695)
445975.COLSTE_00404(PF00958)
445975.COLSTE_02228(PF00731)
445975.COLSTE_00401(PF04326)
445975.COLSTE_00508(PF11070)
445975.COLSTE_01459(PF00232)
445975.COLSTE_02105(PF01695)
445975.COLSTE_00883(PF02873)
445975.COLSTE_02370(PF12762)not used
445975.COLSTE_00072(PF01026)
445975.COLSTE_00176(PF13173)
445975.COLSTE_00179(PF13204)
445975.COLSTE_01008(PF13151)
445975.COLSTE_02574(PF01695)
445975.COLSTE_00838(PF01026)
445975.COLSTE_00301(PF00232)
445975.COLSTE_00944(PF13173)
445975.COLSTE_01017(PF04326)
445975.COLSTE_02096(PF00232)
445975.COLSTE_02547(PF01026)
445975.COLSTE_02431(PF13151)
445975.COLSTE_00040(PF01409)not used
445975.COLSTE_01155(PF00232)
445975.COLSTE_01153(PF00232)
445975.COLSTE_00039(PF01409)
445975.COLSTE_00785(PF12762)not used
445975.COLSTE_01960(PF02873)
445975.COLSTE_00150(PF12762)
445975.COLSTE_00794(PF01026)not used
445975.COLSTE_00795(PF01026)
445975.COLSTE_00792(PF00232)
445975.COLSTE_00570(PF00958)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================