Metamenu

Effective results for Intestinibacter bartlettii DSM 16795 (eggnog40)

Summary

Number of putative secreted proteins: 117
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 117 proteins (23 high, 94 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
445973.CLOBAR_00673PF08239 (PF16403)(mitochondrial)
445973.CLOBAR_01122(PF13402) (PF16403)ER
445973.CLOBAR_01121(PF13402) (PF16403)ER
445973.CLOBAR_01082(PF01554)ER; (ER)
445973.CLOBAR_00867PF08239ER; (ER)
445973.CLOBAR_02693PF08239ER
445973.CLOBAR_01500(PF12838)ER
445973.CLOBAR_01507PF08239ER
445973.CLOBAR_00120(PF00163)(mitochondrial)
445973.CLOBAR_00903(PF06541)ER
445973.CLOBAR_01043PF08239ER
445973.CLOBAR_02390(PF00163)mitochondrial
445973.CLOBAR_02398PF08239ER
445973.CLOBAR_00713PF08239ER
445973.CLOBAR_01384(PF01554)ER
445973.CLOBAR_00636(PF12695)ER
445973.CLOBAR_00954(PF09991)ER; (ER)
445973.CLOBAR_00029(PF09991)ER
445973.CLOBAR_00022(PF14938)mitochondrial
445973.CLOBAR_01034(PF01554)(ER)
445973.CLOBAR_00617PF08239ER
445973.CLOBAR_00407(PF12838) (PF02906) (PF02256)
445973.CLOBAR_01839(PF06541)ER
445973.CLOBAR_01683PF08239ER
445973.CLOBAR_02815(PF01554)(ER)
445973.CLOBAR_02355PF08239(ER)
445973.CLOBAR_02769PF08239(ER)
445973.CLOBAR_02576PF08239ER
445973.CLOBAR_00269(PF02906) (PF02256)
445973.CLOBAR_00678(PF01554)(ER)
445973.CLOBAR_00496PF08239(ER)
445973.CLOBAR_00252(PF02906) (PF02256)
445973.CLOBAR_02395(PF02906)(plastid)
445973.CLOBAR_02392(PF12838) (PF02906)
445973.CLOBAR_01729(PF02906) (PF02256)
445973.CLOBAR_00506PF08239plastid
445973.CLOBAR_00795(PF07837) (PF02971)
445973.CLOBAR_02170PF08239plastid
445973.CLOBAR_00207(PF14512)(plastid)
445973.CLOBAR_00202(PF02607) (PF00809)
445973.CLOBAR_00591(PF01268)
445973.CLOBAR_00592(PF01268)
445973.CLOBAR_00865PF04414
445973.CLOBAR_00862(PF01554)
445973.CLOBAR_00460(PF12838)
445973.CLOBAR_02698PF08239
445973.CLOBAR_02217(PF01487)
445973.CLOBAR_01616(PF01554)
445973.CLOBAR_01196(PF12838)
445973.CLOBAR_01199(PF01554)
445973.CLOBAR_02349PF08239
445973.CLOBAR_02437(PF03063)
445973.CLOBAR_00657(PF01969)
445973.CLOBAR_00491(PF01554)
445973.CLOBAR_00253(PF12838)
445973.CLOBAR_01134(PF01554)
445973.CLOBAR_02399PF08239
445973.CLOBAR_02083(PF00882)
445973.CLOBAR_01841(PF00809)
445973.CLOBAR_01842(PF02607)
445973.CLOBAR_01845(PF02607)
445973.CLOBAR_01350(PF02607)
445973.CLOBAR_01063(PF01554)
445973.CLOBAR_00710(PF12838)not used
445973.CLOBAR_01713(PF07892)
445973.CLOBAR_01714(PF09861)
445973.CLOBAR_01459(PF01554)
445973.CLOBAR_01273(PF01268)
445973.CLOBAR_01272(PF04961)
445973.CLOBAR_01276(PF03063)
445973.CLOBAR_01274(PF01268)
445973.CLOBAR_00708(PF03063)
445973.CLOBAR_01728(PF12838)
445973.CLOBAR_00658(PF01969)
445973.CLOBAR_02281(PF09861)
445973.CLOBAR_01264(PF00809)
445973.CLOBAR_02606(PF12695)
445973.CLOBAR_00257(PF12838)
445973.CLOBAR_01396(PF01554)
445973.CLOBAR_01000PF14853
445973.CLOBAR_01811(PF01554)
445973.CLOBAR_02616(PF09861)
445973.CLOBAR_01928PF08239
445973.CLOBAR_01920(PF08123)
445973.CLOBAR_00295(PF12646)
445973.CLOBAR_02441(PF01554)
445973.CLOBAR_01936(PF00809)
445973.CLOBAR_01027(PF01554)
445973.CLOBAR_01024(PF09861)
445973.CLOBAR_00577(PF12838)
445973.CLOBAR_01348(PF02607)
445973.CLOBAR_01342(PF02607)
445973.CLOBAR_01346(PF00809)
445973.CLOBAR_01345(PF02607)
445973.CLOBAR_00709(PF12838)
445973.CLOBAR_00963(PF03063)
445973.CLOBAR_00965PF08239
445973.CLOBAR_00966(PF12838)
445973.CLOBAR_01356(PF01554)
445973.CLOBAR_01224(PF00882)
445973.CLOBAR_00881PF08239
445973.CLOBAR_00793(PF04961)
445973.CLOBAR_01968(PF12838)
445973.CLOBAR_01147(PF07892)
445973.CLOBAR_01971(PF12638)
445973.CLOBAR_02319(PF12838)
445973.CLOBAR_01207(PF02607)
445973.CLOBAR_01204(PF00809)
445973.CLOBAR_02645(PF02171)
445973.CLOBAR_00933(PF01268)
445973.CLOBAR_01895(PF01487)
445973.CLOBAR_01305(PF01554)
445973.CLOBAR_01633(PF06541)
445973.CLOBAR_01635(PF12838)
445973.CLOBAR_00216(PF12640)
445973.CLOBAR_00857(PF01554)
445973.CLOBAR_02371(PF14512)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================