Effective results for Clostridium botulinum C str. Eklund (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 31 proteins (5 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
445337.CBC_0528				(PF13205) (PF08367)	ER
445337.CBC_0109				(PF01477) (PF00882)	(ER); ER
445337.CBC_A0660				(PF09992)	(ER)
445337.CBC_0527				(PF09992)	ER
445337.CBC_A0851				(PF00163)	mitochondrial
445337.CBC_A0593				(PF13205)	ER
445337.CBC_A1048				(PF13205)	ER
445337.CBC_A1689				(PF13205)	ER
445337.CBC_0281				(PF13205)	ER
445337.CBC_0897				(PF09992)	(ER)
445337.CBC_0926				(PF00163)	mitochondrial
445337.CBC_A1024				(PF00882)	mitochondrial
445337.CBC_0272				PF12260	(mitochondrial); mitochondrial
445337.CBC_A1544				(PF09992)	(mitochondrial)
445337.CBC_A1178				(PF13205)	ER
445337.CBC_A1585				PF00068	ER
445337.CBC_0975				(PF07892)	(mitochondrial)
445337.CBC_A1750				PF05183
445337.CBC_A1659				(PF00622)
445337.CBC_0838				(PF07892)
445337.CBC_0235				(PF09370)
445337.CBC_0237				(PF09370)
445337.CBC_0799				(PF01633)
445337.CBC_0813				(PF01633)
445337.CBC_1072				(PF06777)
445337.CBC_A1665				PF00688
445337.CBC_A1543				(PF09992)	not used
445337.CBC_A1802				PF07453
445337.CBC_0889				(PF12646)
445337.CBC_A0999				(PF08367)
445337.CBC_A1018				(PF01991)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================