Effective results for Bacillus coahuilensis m4-4 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 47 proteins (1 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
441769.Bcoam_010100010955				(PF02681)	ER
441769.Bcoam_010100012100				(PF14748)	(mitochondrial)
441769.Bcoam_010100001995				(PF03851)	(mitochondrial); (plastid)
441769.Bcoam_010100015856				(PF01121)	(mitochondrial)
441769.Bcoam_010100013879				(PF08378)	(ER); (mitochondrial)
441769.Bcoam_010100016096				(PF12606)	ER
441769.Bcoam_010100009655				(PF01036)	ER
441769.Bcoam_010100008890				(PF00318)	(plastid)
441769.Bcoam_010100018187				(PF08378)	(ER)
441769.Bcoam_010100009650				(PF01036)	(plastid)
441769.Bcoam_010100009075				(PF01765)
441769.Bcoam_010100009935				(PF03630)
441769.Bcoam_010100019894				(PF08378)
441769.Bcoam_010100017645				(PF08378)
441769.Bcoam_010100010160				PF06888
441769.Bcoam_010100020689				(PF03851)
441769.Bcoam_010100020684				(PF01073)
441769.Bcoam_010100002486				(PF00814)
441769.Bcoam_010100009430				(PF14748)
441769.Bcoam_010100006875				(PF01795)
441769.Bcoam_010100001275				(PF13455)
441769.Bcoam_010100013339				(PF06941)
441769.Bcoam_010100002496				(PF00814)
441769.Bcoam_010100016785				(PF02681)
441769.Bcoam_010100009700				(PF01715)
441769.Bcoam_010100008055				(PF02873)
441769.Bcoam_010100009095				(PF00318)	not used
441769.Bcoam_010100022305				(PF00814)
441769.Bcoam_010100012230				(PF14748)
441769.Bcoam_010100009080				(PF01765)
441769.Bcoam_010100018197				(PF08378)
441769.Bcoam_010100021494				(PF08892)
441769.Bcoam_010100003239				(PF08892)
441769.Bcoam_010100002501				(PF02367)
441769.Bcoam_010100019704				(PF01073)
441769.Bcoam_010100009695				(PF01715)
441769.Bcoam_010100022295				(PF00814)
441769.Bcoam_010100013739				(PF08378)
441769.Bcoam_010100006885				(PF01795)
441769.Bcoam_010100022310				(PF02367)
441769.Bcoam_010100015861				(PF01121)	not used
441769.Bcoam_010100017295				(PF05495)
441769.Bcoam_010100014124				(PF14748)
441769.Bcoam_010100018100				(PF02873)
441769.Bcoam_010100016565				(PF06941)
441769.Bcoam_010100016410				(PF12695)	not used
441769.Bcoam_010100016415				(PF12695)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================