Metamenu

Effective results for Lactobacillus jensenii 1153 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 21 proteins (0 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
440497.LBJG_00239(PF03577)mitochondrial
440497.LBJG_01066(PF13204)(mitochondrial)
440497.LBJG_01296(PF03577)(mitochondrial)
440497.LBJG_01632(PF13204)(ER)
440497.LBJG_00515(PF00872)
440497.LBJG_00699(PF00872)
440497.LBJG_00453(PF00872)
440497.LBJG_00829(PF03577)
440497.LBJG_00349(PF00872)
440497.LBJG_00481(PF00872)
440497.LBJG_01542(PF00872)
440497.LBJG_00621(PF00872)
440497.LBJG_01481(PF00872)
440497.LBJG_00791(PF00872)
440497.LBJG_00491(PF00872)
440497.LBJG_00964(PF00872)
440497.LBJG_00380(PF00872)
440497.LBJG_01517(PF00872)
440497.LBJG_00649(PF00872)
440497.LBJG_00325(PF00872)
440497.LBJG_00956(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================