Metamenu

Effective results for Ochrobactrum anthropi ATCC 49188 (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 101
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
439375.Oant_1652(PF00050) (PF07648)ER
439375.Oant_2398+ER
439375.Oant_3560+ER
439375.Oant_0664+(ER); ER
439375.Oant_1563+(mitochondrial)
439375.Oant_0376+ER
439375.Oant_1558+mitochondrial; (mitochondrial)
439375.Oant_2757(PF03050)(mitochondrial)
439375.Oant_2755(PF03050)(mitochondrial)
439375.Oant_0533+ER
439375.Oant_0280+ER
439375.Oant_1136+mitochondrial
439375.Oant_1937+ER
439375.Oant_1568+mitochondrial; (mitochondrial)
439375.Oant_0898(PF03050)(mitochondrial)
439375.Oant_4219+ER
439375.Oant_2480(PF03050)(mitochondrial)
439375.Oant_0406+ER; (ER)
439375.Oant_2497+ER
439375.Oant_2672+ER
439375.Oant_3440+mitochondrial
439375.Oant_2682+ER
439375.Oant_0425(PF05990)ER
439375.Oant_4122+ER
439375.Oant_3650+ER
439375.Oant_2870+(mitochondrial)
439375.Oant_2277+(mitochondrial); mitochondrial
439375.Oant_1501+(ER)
439375.Oant_1769+ER
439375.Oant_2425(PF05990)ER
439375.Oant_0119+ER
439375.Oant_1564+(mitochondrial)
439375.Oant_0343+ER
439375.Oant_2728(PF03050)(mitochondrial)
439375.Oant_1847+ER
439375.Oant_3594+(mitochondrial); (ER)
439375.Oant_0711(PF03050)(mitochondrial)
439375.Oant_2099+(mitochondrial); (ER)
439375.Oant_3039+mitochondrial; (mitochondrial)
439375.Oant_3083+ER
439375.Oant_2111+(PF01442)
439375.Oant_2285+(mitochondrial)
439375.Oant_2461(PF16901)(mitochondrial)
439375.Oant_1881+(plastid)
439375.Oant_4210+(mitochondrial)
439375.Oant_1979+
439375.Oant_1153+
439375.Oant_3036+
439375.Oant_3383+
439375.Oant_4036+
439375.Oant_3707PF07823
439375.Oant_3095+
439375.Oant_2614+
439375.Oant_4281+
439375.Oant_2976(PF01812)
439375.Oant_1803+
439375.Oant_2289+
439375.Oant_1820+
439375.Oant_2596+
439375.Oant_2624+
439375.Oant_2629+
439375.Oant_0269(PF16901)
439375.Oant_1151+
439375.Oant_1922+
439375.Oant_2744(PF03050)
439375.Oant_1967+
439375.Oant_2910(PF16901)
439375.Oant_2918(PF16901)
439375.Oant_2829(PF13384)
439375.Oant_2131+
439375.Oant_1933+
439375.Oant_4184+
439375.Oant_4183+
439375.Oant_4160+
439375.Oant_2838+
439375.Oant_0502+
439375.Oant_0475+
439375.Oant_0659(PF03050)
439375.Oant_4038+
439375.Oant_3686+
439375.Oant_2249+
439375.Oant_3140+
439375.Oant_0229+
439375.Oant_1412(PF07930)
439375.Oant_0417(PF00777)
439375.Oant_1789(PF13384)
439375.Oant_4425(PF13384)
439375.Oant_2150+
439375.Oant_4046+
439375.Oant_2268+
439375.Oant_2445(PF05990)
439375.Oant_3652+
439375.Oant_1653+
439375.Oant_0210+
439375.Oant_4069+
439375.Oant_1357+
439375.Oant_4328(PF03050)
439375.Oant_3961+
439375.Oant_2980(PF01812)
439375.Oant_3077(PF16901)
439375.Oant_2726(PF03050)
439375.Oant_1194(PF01812)
439375.Oant_0803+
439375.Oant_2717(PF13384)
439375.Oant_0138+
439375.Oant_2521+
439375.Oant_0964+
439375.Oant_0389(PF13384)
439375.Oant_0038+
439375.Oant_2758+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.5 (15/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================